<?xml version="1.0" standalone="yes"?>
<!-- Generated by BEAUTi v1.5.3                                              -->
<!--       by Alexei J. Drummond and Andrew Rambaut                          -->
<!--       Department of Computer Science, University of Auckland and        -->
<!--       Institute of Evolutionary Biology, University of Edinburgh        -->
<!--       http://beast.bio.ed.ac.uk/                                        -->
<beast>
	
	<!-- The list of taxa analyse (can also include dates/ages).                 -->
	<!-- ntax=28                                                                 -->
	<taxa id="taxa">
		<taxon id="Dalnegorsk_FJ402886">
			<date value="1973.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Glubinnoe2004_DQ862460">
			<date value="2004.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="GGEV_DQ235153">
			<date value="1971.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Hypr_U39292">
			<date value="1953.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="K23_AM600965">
			<date value="1975.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Kavalerovo_FJ402885">
			<date value="1985.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Kolarovo_2008_FJ968751">
			<date value="2008.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="LIV369_T2_Y07863">
			<date value="1963.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Neudoerfl_U27495">
			<date value="1971.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Oshima_5_10_AB062063">
			<date value="1995.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primirye_89_FJ906622">
			<date value="1989.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_212_EU816450">
			<date value="1991.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_253_EU816451">
			<date value="1991.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_270_EU816452">
			<date value="1991.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_332_AY169390">
			<date value="1991.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_69_EU816453">
			<date value="1969.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_86_EU816455">
			<date value="1986.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Primorye_94_EU816454">
			<date value="1994.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Sofjin_HO_AB062064">
			<date value="1937.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="SSEV_DQ235152">
			<date value="1987.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Toro_2003_DQ401140">
			<date value="2003.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="TSEV_DQ235151">
			<date value="1980.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Vasilchenko_AF069066">
			<date value="1969.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="178_79_EF469661">
			<date value="1979.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="205_DQ989336">
			<date value="1973.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="263_DQ153877">
			<date value="1987.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="886_84_EF469662">
			<date value="1984.0" direction="forwards" units="years"/>
		</taxon>
		<taxon id="Zausaev_AF527415">
			<date value="1985.0" direction="forwards" units="years"/>
		</taxon>
	</taxa>
	
	<taxa id="FETBE">
		<taxon idref="205_DQ989336"/>
		<taxon idref="Dalnegorsk_FJ402886"/>
		<taxon idref="Glubinnoe2004_DQ862460"/>
		<taxon idref="Kavalerovo_FJ402885"/>
		<taxon idref="Oshima_5_10_AB062063"/>
		<taxon idref="Primorye_212_EU816450"/>
		<taxon idref="Primorye_253_EU816451"/>
		<taxon idref="Primorye_270_EU816452"/>
		<taxon idref="Primorye_332_AY169390"/>
		<taxon idref="Primorye_69_EU816453"/>
		<taxon idref="Primorye_86_EU816455"/>
		<taxon idref="Primirye_89_FJ906622"/>
		<taxon idref="Primorye_94_EU816454"/>
		<taxon idref="Sofjin_HO_AB062064"/>
	</taxa>
	<taxa id="FETBEaSTBE">
		<taxon idref="205_DQ989336"/>
		<taxon idref="Dalnegorsk_FJ402886"/>
		<taxon idref="Glubinnoe2004_DQ862460"/>
		<taxon idref="Kavalerovo_FJ402885"/>
		<taxon idref="Oshima_5_10_AB062063"/>
		<taxon idref="Primorye_212_EU816450"/>
		<taxon idref="Primorye_253_EU816451"/>
		<taxon idref="Primorye_270_EU816452"/>
		<taxon idref="Primorye_332_AY169390"/>
		<taxon idref="Primorye_69_EU816453"/>
		<taxon idref="Primorye_86_EU816455"/>
		<taxon idref="Primirye_89_FJ906622"/>
		<taxon idref="Primorye_94_EU816454"/>
		<taxon idref="Sofjin_HO_AB062064"/>
		<taxon idref="Kolarovo_2008_FJ968751"/>
		<taxon idref="Vasilchenko_AF069066"/>
		<taxon idref="Zausaev_AF527415"/>
	</taxa>
	<taxa id="SSaLIV">
		<taxon idref="LIV369_T2_Y07863"/>
		<taxon idref="SSEV_DQ235152"/>
	</taxa>
	<taxa id="STBE">
		<taxon idref="Kolarovo_2008_FJ968751"/>
		<taxon idref="Vasilchenko_AF069066"/>
		<taxon idref="Zausaev_AF527415"/>
	</taxa>
	<taxa id="WTBE">
		<taxon idref="263_DQ153877"/>
		<taxon idref="Hypr_U39292"/>
		<taxon idref="K23_AM600965"/>
		<taxon idref="Neudoerfl_U27495"/>
		<taxon idref="Toro_2003_DQ401140"/>
	</taxa>
	<taxa id="WTBEaSSaLIV">
		<taxon idref="LIV369_T2_Y07863"/>
		<taxon idref="263_DQ153877"/>
		<taxon idref="Hypr_U39292"/>
		<taxon idref="K23_AM600965"/>
		<taxon idref="Neudoerfl_U27495"/>
		<taxon idref="Toro_2003_DQ401140"/>
		<taxon idref="SSEV_DQ235152"/>
	</taxa>
	<taxa id="WTBEaSSaLIVaTS">
		<taxon idref="LIV369_T2_Y07863"/>
		<taxon idref="TSEV_DQ235151"/>
		<taxon idref="263_DQ153877"/>
		<taxon idref="Hypr_U39292"/>
		<taxon idref="K23_AM600965"/>
		<taxon idref="Neudoerfl_U27495"/>
		<taxon idref="Toro_2003_DQ401140"/>
		<taxon idref="SSEV_DQ235152"/>
	</taxa>
	
	<!-- The sequence alignment (each sequence refers to a taxon above).         -->
	<!-- ntax=28 nchar=393                                                       -->
	<alignment id="alignment" dataType="nucleotide">
		<sequence>
			<taxon idref="Dalnegorsk_FJ402886"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCCTGGCCAGCGGTATGATGCGGCACACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTCCTGCTCATGCTGGTGCTAGGGACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAGGAGGAAAGAGTGATGGCTTTCTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Glubinnoe2004_DQ862460"/>
			TCGTTCAGTGAACCACTGACTGTTGTGGGAGTTATGCTAACCCTGGCCAGCGGCATGATGCGGCATACTTCTCAGGAGGCCCTCTGCGCGCTCGCCGTGGCTTCGTTCCTTTTGCTCATGCTGGTGTTGGGGACAAGGAAGATGCAGTTGGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTGGTGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAGAGAGTGATGGCTTTTTGGCTGCTGGCAGGGCTGGCGGCTTCAGCTTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="GGEV_DQ235153"/>
			TCGTTTAGTGAGCCACTGACGGTGGTGGGGGTCATGCTGACACTGGCTGGCGGCATGATGCGACACACGTCCCAGGAGGCTCTCTGCGCGCTTGCAGTGGCCTCATTTCTCCTGCTGATGCTGGTGCTAGGGACAAGGAAAATGCAGCTGGTAGCTGAGTGGAGTGGCTGCGTGGAATGGCACCCGGAATTGGTGAATGAGGGTGGAGAAGTCAGCTTGCGGGTCCGGCAGGACTCAATGGGGAACTTTCACCTAACAGAACTTGAGAAAGAGGAGAGGATGATGGCTTTCTGGCTACTTGCCGGCCTGGCGGCTTCGGCCCTTCATTGGTCAGGGATCCTTGGAGTGATGGGACTGTGGACGCTTACGGAAATGCTGAGATCACCCCGCAAG
		</sequence>
		<sequence>
			<taxon idref="Hypr_U39292"/>
			TCTTTCAGTGAACCACTAACTGTGGTAGGGGTCATGCTGACATTGGCTAGCGGCATGATGCGACACACCTCCCAGGAGGCTCTCTGTGCACTCGCAGTGGCCTCGTTTCTCTTGTTAATGCTGGTGCTGGGGACAAGAAAGATGCAGCTGGTTGCCGAATGGAGTGGCTGTGTGGAATGGCATCCGGAACTAGTGAATGAGGGTGGAGAGGTTAGCCTGCGGGTCCGTCAGGACGCGATGGGAAACTTTCACTTGACTGAGCTCGAGAAAGAAGAGAGAATGATGGCTTTTTGGTTGATTGCCGGCTTGGCAGCTTCGGCCATTCATTGGTCAGGCATTATTGGTGTGATGGGACTGTGGACGCTCACGAAAATGCTGAGGTCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="K23_AM600965"/>
			TCTTTCAGTGAACCACTAACTGTGGTAGGAGTCATGCTAACACTGGCCAGCGGCATGATGCGACACACCTCCCAAGAGGCTCTCTGTGCACTCGCGGTGGCCTCGTTTCTCTTGTTGATGCTGGTGCTGGGGACAAGAAAGATGCAGCTGGTTGCCGAATGGAGTGGCTGCGTGGAATGGCATCCGGAACTAGTGAATGAGGGTGGAGAGGTTAGCCTGCGGGTCCGTCAGGACGCGATGGGAAACTTTCACTTGACTGAGCTCGAGAAAGAAGAGAGAATGATGGCTTTCTGGCTGCTTGCCGGCTTGGCAGCTTCGGCCATTCATTGGTCAGGCATTCTTGGTGTGATGGGATTGTGGACGCTCACGGAGATGCTGAGGCCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="Kavalerovo_FJ402885"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCCCTTTGCGCGCTCGCCGTGGCCTCGTTCCTTCTGCTCATGTTGGTACTAGGGACAAGGAAGATGCAGCTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTGGTGAATGAAGGTGGAGAGGTGAGCCTGCGAGTCCGGCAGGACTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAGAGAGTGATGGCTTTCTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTCCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCGGAAATGCTGAGGACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Kolarovo_2008_FJ968751"/>
			TCATTTAGTGAACCACTGACTGTCGTGGGAGTCATGCTGACACTGGCTGGCGGCATGATGCGCCACACTTCCCAGGAGGCTTTGTGCGCACTCGCGGTGGCCTCATTCCTCCTACTGATGCTAGTGTTGGGGACAAGGAAAATGCAGCTAGTGGCTGAATGGAGTGGCTGTGTAGAATGGCACCCGGAACTGGTAAACGAGGGTGGAGAGGTGAGCTTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACGGAGCTTGAGAAAGAAGAGAGAGTGATGGCCTTTTGGTTACTTGCTGGGCTTGCGGCTTCGGCCTTTCACTGGTCGGGGATTCTTGGGGTGATGGGACTGTGGACGCTATCAGAAATGATGAGATCGGCCCGAAGA
		</sequence>
		<sequence>
			<taxon idref="LIV369_T2_Y07863"/>
			TCTTTCAGTGAGCCACTGACCGTGGTAGTGGTCATGCTGACACTGGCAAGCGGTATGATGCGTCACACCTCCCAAGAGGCTCTTTGTGCGCTCGCGGTGGCCTCGTTTTTCTTGCTGATGCTTGTGTCCGGGACGAGGAAAATGCAGCTGGTTGCTGAATGGAGCGGCTGTGTTGAATGGCATCCGGAAACGGTGAATGAGGGTGGAGAGATCAGCCTGCGGGTCCGTCAAGACTCGATGGGAAACTTTCATTTGACTGAGCTTGAGAAAGAGGAAAGGATGATGGCTTTTTGGCTGCTTGCCGGCCTGGTGGCTTCAGCACTCCATTGGTCAGGCATCCTTGGTGTGATGGGACTGTGGACACTCACAGAAATAATGAGGTCATCCAGACGG
		</sequence>
		<sequence>
			<taxon idref="Neudoerfl_U27495"/>
			TCTTTCAGTGAACCACTAACTGTGGTAGGAGTCATGCTAACACTGGCCAGCGGCATGATGCGACACACTTCCCAGGAGGCTCTCTGTGCACTCGCAGTGGCCTCGTTTCTCTTGCTGATGCTGGTGCTGGGGACAAGAAAGATGCAGCTGGTTGCCGAATGGAGTGGCTGCGTTGAATGGTATCCGGAACTAGTGAATGAGGGTGGAGAGGTTAGCCTGCGGGTCCGGCAGGACGCGATGGGTAACTTTCACTTGACTGAGCTCGAGAAAGAAGAGAGAATGATGGCTTTTTGGCTGATTGCCGGCTTGGCAGCTTCGGCCATTCACTGGTCAGGCATTCTTGGTGTGATGGGACTGTGGACGCTCACGGAAATGCTGAGGTCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="Oshima_5_10_AB062063"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCCTGGCCAGCGGCATGATGCGGCATACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTTATGCTGGTGCTGGGGACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTACGGGTCCGACAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primirye_89_FJ906622"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCCTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTTTGTGCGCTCGCCGTAGCTTCGTTCCTCCTGCTCATGCTGGTGCTAGGGACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTAATGAATGAAGGTGGAGAGGTGAGCCTGCGAGTCCGGCAGGACTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTCCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTTTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_212_EU816450"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTCATGTTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCGGCCGTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACTGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_253_EU816451"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCATACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTCATGTTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCGGCCGTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_270_EU816452"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCATACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTCATGCTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTAGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCGGCCGTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_332_AY169390"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTCATGTTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCGGCCGTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACTGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_69_EU816453"/>
			TCATTTAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCCTGGCCAGCGGTATGATGCGGCATACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTCATGCTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGACAGGATTCAATGGGAAACTTCCATCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGGAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_86_EU816455"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCTTGGCCAGCGGCATGATGCGGCATACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTTATGCTGGTGCTGGGAACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAATTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTGGCGGCTTCGGCCGTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Primorye_94_EU816454"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTAACCCTGGCCAGCGGTATGATGCGGCACACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTAGCTTCGTTCCTCCTGCTCATGCTGGTGCTAGGGACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTCTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Sofjin_HO_AB062064"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTCATGCTGACCCTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTTTGCGCGCTCGCCGTGGCTTCGTTCCTCCTGCTCATGCTGGTGCTAGGGACAAGGAAGATGCAGTTGGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTAATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACAGAGCTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCAGGACTAGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="SSEV_DQ235152"/>
			TCTTTCAGTGAACCACTGACTGTGGTGGGGGTCATGCTGACACTGGCTAGTGGCATGATGCGCCATACCTCCCAGGAGGCTCTTTGCGCGCTTGCAGTGGCCTCATTCCTCTTGTTAATGCTTGTGCTTGGGACGAGAAAGATGCAGATGGTTGCTGAATGGAGCGGCTGTGTAGAATGGCATCCCGAACTGGTGAATGAGGGAGGAGAGATCAGCCTGCGGGTCCGTCAGGACTCGATGGGAAACTTTCACTTGACTGAGCTTGAGAAAGAAGAAAGGATGATGGCTTTTTGGCTGCTCGCCGGTTTGGTAGCTTCGGCACTCCATTGGTCAGGCATCCTTGGTGTGATGGGACTGTGGACACTTACAGAAGTGATGAGGTCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="Toro_2003_DQ401140"/>
			TCTTTCAGTGAACCACTAACTGTGGTAGGAGTCATGCTAACACTGGCCAGCGGCATGATGCGACACACCTCCCAGGAGGCTCTCTGTGCACTTGCAGTGGCCTCGTTTCTCTTGTTAATGCTGGTGCTGGGGACAAGAAAGATGCAGCTGGTTGCCGAATGGAGTGGCTGCGTGGAATGGCATCCAGAACTAGTGAATGAGGGTGGAGAGGTTAGCCTGCGGGTCCGTCAGGACGCGATGGGAAACTTTCACTTGACTGAGCTCGAGAAAGAAGAGAGAATGATGGCTTTTTGGCTGCTTGCCGGCTTGGCAGCCTCGGCCATTCATTGGTCAGGCATTCTTGGTGTGATGGGACTGTGGACGCTCACGGAAATGCTGAGGTCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="TSEV_DQ235151"/>
			TCCTTTAGTGAGCCACTGACTGTGGTGGGAGTCATGCTGACACTGGCTGGCGGCATGATGCGACACACGTCCCAGGAGGCTCTCTGCGCGCTCGCAGTGGCCTCATTTCTCCTGCTGATGCTGGTGCTAGGGACAAGGAAAATGCAGCTAGTGGCTGAGTGGAGTGGCTGCGTGGAATGGCACCCGGAATTGGCGAACGAGGGTGGAGAGATCAGCTTGCGGGTCCGGCAGGACTCAATGGGGAACTTTCACCTAACGGAACTTGAGAAAGAGGAAAGGATGATGGCTTTCTGGCTACTTGCCGGCTTGGCGGCTTCGGCTTTCCATTGGTCAGGAATCCTTGGGGTGATGGGACTGTGGACGCTCACGGAAATGCTGAGATCACCCCGCAAG
		</sequence>
		<sequence>
			<taxon idref="Vasilchenko_AF069066"/>
			TCATTTAGTGAACCACTGACTGTCGTGGGAGTCATGCTGACACTGGCTGGCGGTATGATGCGCCACACTTCCCAGGAGGCTTTGTGCGCACTCGCAGTAGCTTCATTCCTCCTACTCATGCTAGTGTTGGGGACAAGGAAGATGCAGCTAGTGGCTGAATGGAGTGGCTGTGTGGAATGGCACCCGGAACTGGTAAACGAGGGTGGAGAGGTGAGCTTGCGGGTCCGGCAGGATTCAATGGGAAACTTTCACCTGACGGAGCTTGAGAAAGAAGAGAGAGTGATGGCCTTTTGGTTACTTGCTGGGCTTGCGGCTTCGGCCTTCCACTGGTCGGGGATTCTTGGAGTGATGGGACTGTGGACGCTATCAGAAATGATGAGATCGGCCCGAAGA
		</sequence>
		<sequence>
			<taxon idref="178_79_EF469661"/>
			TCTTTTAGCGAACCGTTGACCGTTGTGGGAGTCATGCTCACCTTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTTTGTGCACTCGCAGTGGCCTCATTCCTTCTGCTCATGCTGGTGCTGGGGACAAGGAAGATGCAATTGGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAGCTAATGAATGAAGGTGGGGAAGTGAGCCTGCGGGTCCGGCAGGACTCAATGGGAAACTTCCACCTGACAGAACTTGAGAAAGAGGAAAGAGTGATGGCTTTTTGGCTGCTGGCTGGACTGGCTGCTTCGGCTTTCCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACACTGTCAGAAATGCTGAGGACGGCTCGGAGA
		</sequence>
		<sequence>
			<taxon idref="205_DQ989336"/>
			TCATTCAGTGAACCACTGACTGTTGTGGGAGTTATGCTAACCCTGGCCAGCGGCATGATGCGGCACACCTCTCAGGAGGCTCTCTGCGCGCTCGCCGTGGCTTCGTTCCTTCTGCTTATGCTGGTGCTGGGGACAAGGAAGATGCAGTTAGTGGCTGAATGGAGTGGCTGTGTGGAGTGGCACCCAGAACTGATGAATGAAGGTGGAGAGGTGAGCCTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACTTGACAGAGCTTGAGAAAGAGGAGAGAGTGATGGCGTTTTGGCTGCTGGCAGGACTGGCGGCTTCAGCCTTTCACTGGTCCGGCATCCTTGGTGTGATGGGATTGTGGACGCTGTCAGAAATGCTGAGAACGGCTCGAAGA
		</sequence>
		<sequence>
			<taxon idref="263_DQ153877"/>
			TCTTTCAGTGAACCACTAACTGTGGTAGGAGTCATGCTAACACTGGCCAGCGGCATGATGCGACACACTCCCCAGGAGGCTCTCTGTGCACTCGCAGTGGCCTCGTTTCTCTTGCTGATGCTGGTGCTGGGGACAAGAAAGATGCAGCTGGTTGCCGAATGGAGTGGCTGCGTGGAATGGCATCCGGAACTAGTGAATGAGGGTGGAGAGGTTAGCCTGCGGGTCCGTCAGGACGCGATGGGAAACTTTCACTTGACTGAGCTCGAGAAAGAAGAGAGAATGATGGCTTTTTGGCTGCTGGCCGGCTTGGCAGCTTCGGCCATTCATTGGTCAGGCATTCTTGGTGTGATGGGACTGTGGACGCTCACGGAAATGCTGAGGTCATCCCGAAGG
		</sequence>
		<sequence>
			<taxon idref="886_84_EF469662"/>
			TCATTTAGTGAACCACTAACTGTTGTGGGAGTCATGCTAACCTTGGCCAGTGGCATGATGCGGCATACTTCCCAAGAGGCTCTCTGCGCACTTGCAGTGGCTTCGTTTCTCCTGCTCATGCTGGTACTGGGGACAAGGAAGATGCAGCTGGTGGCTGAATGGAGTGGCTGTGTGGAATGGCATCCGGAACTGATGAATGAGGGTGGAGAGGTGAGCCTGCGAGTCCGACAGGACTCAATGGGAAACTTTCACCTGACAGAGCTTGAGAAAGAGGAGAGAGTGATGGCTTTTTGGCTGCTGGCTGGACTGGCAGCTTCGGCCTTTCACTGGTCAGGCATTCTTGGTGTGATGGGACTGTGGACGCTGTCAGAAATGCTAAAAACGGCGCGAAGA
		</sequence>
		<sequence>
			<taxon idref="Zausaev_AF527415"/>
			TCATTTAGTGAACCACTGACTGTCGTGGGAGTCATGCTGACACTGGCTGGCGGCATGATGCGCCACACTTCCCAGGAGGCTCTGTGCGCACTCGCGGTGGCCTCATTCCTTCTACTCATGCTAGTGTTGGGGACAAGAAAGATGCAGCTGGTGGCTGAATGGAGTGGCTGTGTAGAATGGCACCCGGAACTGGTAAATGAGGGTGGAGAGGTGAGTTTGCGGGTCCGGCAGGATTCAATGGGAAACTTCCACCTGACGGAGCTTGAGAAAGAAGAGAGAGTGATGGCTTTTTGGTTACTTGCTGGGCTTGCGGCTTCGGCCCTCCATTGGTCAGGGATTCTTGGAGTGATGGGACTATGGACACTATCAGAAATGATGAGATCGGCCCGAAGA
		</sequence>
	</alignment>
	
	
	<!-- The unique patterns for codon positions 1 & 2                           -->
	<mergePatterns id="CP1+2.patterns">
		<!-- The unique patterns from 1 to end every 3                               -->
		<!-- npatterns=37                                                            -->
		<patterns from="1" every="3">
			<alignment idref="alignment"/>
		</patterns>
		<!-- The unique patterns from 2 to end every 3                               -->
		<!-- npatterns=10                                                            -->
		<patterns from="2" every="3">
			<alignment idref="alignment"/>
		</patterns>
	</mergePatterns>
	<!-- The unique patterns for codon positions 3                               -->
	<mergePatterns id="CP3.patterns">
		<!-- The unique patterns from 3 to end every 3                               -->
		<!-- npatterns=107                                                           -->
		<patterns from="3" every="3">
			<alignment idref="alignment"/>
		</patterns>
	</mergePatterns>
	
	<!-- This is a simple constant population size coalescent model              -->
	<!-- that is used to generate an initial tree for the chain.                 -->
	<constantSize id="initialDemo" units="years">
		<populationSize>
			<parameter id="initialDemo.popSize" value="100.0"/>
		</populationSize>
	</constantSize>
	
	<!-- Construct a rough-and-ready UPGMA tree as an starting tree              -->
	<upgmaTree id="startingTree" rootHeight="1500.0">
		<distanceMatrix correction="JC">
			<patterns>
				<!-- To generate UPGMA starting tree, only use the 1st aligment, which may be 1 of many aligments using this tree.-->
				<alignment idref="alignment"/>
			</patterns>
		</distanceMatrix>
	</upgmaTree>
	
	<!-- Generate a tree model                                                   -->
	<treeModel id="treeModel">
		<upgmaTree idref="startingTree"/>
		<rootHeight>
			<parameter id="treeModel.rootHeight"/>
		</rootHeight>
		<nodeHeights internalNodes="true">
			<parameter id="treeModel.internalNodeHeights"/>
		</nodeHeights>
		<nodeHeights internalNodes="true" rootNode="true">
			<parameter id="treeModel.allInternalNodeHeights"/>
		</nodeHeights>
	</treeModel>
	
	<!-- Generate a generalizedSkyLineLikelihood for Bayesian Skyline            -->
	<generalizedSkyLineLikelihood id="skyline" linear="false">
		<populationSizes>
			<parameter id="skyline.popSize" dimension="8" value="710.0 710.0 710.0 710.0 710.0 710.0 710.0 710.0" lower="0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0" upper="Infinity Infinity Infinity Infinity Infinity Infinity Infinity Infinity"/>
		</populationSizes>
		<groupSizes>
			<parameter id="skyline.groupSize" dimension="8"/>
		</groupSizes>
		<populationTree>
			<treeModel idref="treeModel"/>
		</populationTree>
	</generalizedSkyLineLikelihood>
	
	<exponentialMarkovLikelihood id="eml1" jeffreys="true">
		<chainParameter>
			<parameter idref="skyline.popSize"/>
		</chainParameter>
	</exponentialMarkovLikelihood>
	
	<!-- The uncorrelated relaxed clock (Drummond, Ho, Phillips & Rambaut, 2006) -->
	<discretizedBranchRates id="branchRates">
		<treeModel idref="treeModel"/>
		<distribution>
			<logNormalDistributionModel meanInRealSpace="true">
				<mean>
					<parameter id="ucld.mean" value="1.9E-4" lower="0.0" upper="Infinity"/>
				</mean>
				<stdev>
					<parameter id="ucld.stdev" value="0.1" lower="0.0" upper="Infinity"/>
				</stdev>
			</logNormalDistributionModel>
		</distribution>
		<rateCategories>
			<parameter id="branchRates.categories" dimension="54"/>
		</rateCategories>
	</discretizedBranchRates>
	
	<rateStatistic id="meanRate" name="meanRate" mode="mean" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	
	<rateStatistic id="coefficientOfVariation" name="coefficientOfVariation" mode="coefficientOfVariation" internal="true" external="true">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateStatistic>
	
	<rateCovarianceStatistic id="covariance" name="covariance">
		<treeModel idref="treeModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</rateCovarianceStatistic>
	
	<!-- The HKY substitution model (Hasegawa, Kishino & Yano, 1985)             -->
	<HKYModel id="CP1+2.hky">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<frequencies>
					<parameter id="CP1+2.frequencies" value="0.25 0.25 0.25 0.25"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<kappa>
			<parameter id="CP1+2.kappa" value="1.0" lower="0.0" upper="Infinity"/>
		</kappa>
	</HKYModel>
	<!-- The HKY substitution model (Hasegawa, Kishino & Yano, 1985)             -->
	<HKYModel id="CP3.hky">
		<frequencies>
			<frequencyModel dataType="nucleotide">
				<frequencies>
					<parameter id="CP3.frequencies" value="0.25 0.25 0.25 0.25"/>
				</frequencies>
			</frequencyModel>
		</frequencies>
		<kappa>
			<parameter id="CP3.kappa" value="1.0" lower="0.0" upper="Infinity"/>
		</kappa>
	</HKYModel>
	
	<!-- site model                                                              -->
	<siteModel id="CP1+2.siteModel">
		<substitutionModel>
			<HKYModel idref="CP1+2.hky"/>
		</substitutionModel>
		<relativeRate>
			<parameter id="CP1+2.mu" value="1.0" lower="0.0" upper="Infinity"/>
		</relativeRate>
		<gammaShape gammaCategories="4">
			<parameter id="CP1+2.alpha" value="0.5" lower="0.0" upper="1000.0"/>
		</gammaShape>
		<proportionInvariant>
			<parameter id="CP1+2.pInv" value="0.5" lower="0.0" upper="1.0"/>
		</proportionInvariant>
	</siteModel>
	<!-- site model                                                              -->
	<siteModel id="CP3.siteModel">
		<substitutionModel>
			<HKYModel idref="CP3.hky"/>
		</substitutionModel>
		<relativeRate>
			<parameter id="CP3.mu" value="1.0" lower="0.0" upper="Infinity"/>
		</relativeRate>
		<gammaShape gammaCategories="4">
			<parameter id="CP3.alpha" value="0.5" lower="0.0" upper="1000.0"/>
		</gammaShape>
		<proportionInvariant>
			<parameter id="CP3.pInv" value="0.5" lower="0.0" upper="1.0"/>
		</proportionInvariant>
	</siteModel>

	<compoundParameter id="allMus">
		<parameter idref="CP1+2.mu"/>
		<parameter idref="CP3.mu"/>
	</compoundParameter>
	
	<treeLikelihood id="CP1+2.treeLikelihood" useAmbiguities="false">
		<mergePatterns idref="CP1+2.patterns"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="CP1+2.siteModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>
	<treeLikelihood id="CP3.treeLikelihood" useAmbiguities="false">
		<mergePatterns idref="CP3.patterns"/>
		<treeModel idref="treeModel"/>
		<siteModel idref="CP3.siteModel"/>
		<discretizedBranchRates idref="branchRates"/>
	</treeLikelihood>
	
	
	<tmrcaStatistic id="tmrca(FETBE)">
		<mrca>
			<taxa idref="FETBE"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(FETBEaSTBE)">
		<mrca>
			<taxa idref="FETBEaSTBE"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(SSaLIV)">
		<mrca>
			<taxa idref="SSaLIV"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(STBE)">
		<mrca>
			<taxa idref="STBE"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(WTBE)">
		<mrca>
			<taxa idref="WTBE"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(WTBEaSSaLIV)">
		<mrca>
			<taxa idref="WTBEaSSaLIV"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<tmrcaStatistic id="tmrca(WTBEaSSaLIVaTS)">
		<mrca>
			<taxa idref="WTBEaSSaLIVaTS"/>
		</mrca>
		<treeModel idref="treeModel"/>
	</tmrcaStatistic>
	<!-- Define operators                                                        -->
	<operators id="operators">
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP1+2.kappa"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP3.kappa"/>
		</scaleOperator>
		<deltaExchange delta="0.01" weight="0.1">
			<parameter idref="CP1+2.frequencies"/>
		</deltaExchange>
		<deltaExchange delta="0.01" weight="0.1">
			<parameter idref="CP3.frequencies"/>
		</deltaExchange>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP1+2.alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP3.alpha"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP1+2.pInv"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="0.1">
			<parameter idref="CP3.pInv"/>
		</scaleOperator>
		<deltaExchange delta="0.75" parameterWeights="262 131" weight="2">
			<parameter idref="allMus"/>
		</deltaExchange>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="ucld.mean"/>
		</scaleOperator>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="ucld.stdev"/>
		</scaleOperator>
		<subtreeSlide size="71.0" gaussian="true" weight="15">
			<treeModel idref="treeModel"/>
		</subtreeSlide>
		<narrowExchange weight="15">
			<treeModel idref="treeModel"/>
		</narrowExchange>
		<wideExchange weight="3">
			<treeModel idref="treeModel"/>
		</wideExchange>
		<wilsonBalding weight="3">
			<treeModel idref="treeModel"/>
		</wilsonBalding>
		<scaleOperator scaleFactor="0.75" weight="3">
			<parameter idref="treeModel.rootHeight"/>
		</scaleOperator>
		<uniformOperator weight="30">
			<parameter idref="treeModel.internalNodeHeights"/>
		</uniformOperator>
		<scaleOperator scaleFactor="0.75" weight="15">
			<parameter idref="skyline.popSize"/>
		</scaleOperator>
		<deltaExchange delta="1" integer="true" weight="6" autoOptimize="false">
			<parameter idref="skyline.groupSize"/>
		</deltaExchange>
		<upDownOperator scaleFactor="0.75" weight="3">
			<up>
				<parameter idref="ucld.mean"/>
			</up>
			<down>
				<parameter idref="treeModel.allInternalNodeHeights"/>
			</down>
		</upDownOperator>
		<swapOperator size="1" weight="10" autoOptimize="false">
			<parameter idref="branchRates.categories"/>
		</swapOperator>
		<randomWalkIntegerOperator windowSize="1" weight="10">
			<parameter idref="branchRates.categories"/>
		</randomWalkIntegerOperator>
		<uniformIntegerOperator weight="10">
			<parameter idref="branchRates.categories"/>
		</uniformIntegerOperator>
	</operators>
	
	<!-- Define MCMC                                                             -->
	<mcmc id="mcmc" chainLength="20000000" autoOptimize="true">
		<posterior id="posterior">
			<prior id="prior">
				<gammaPrior shape="0.05" scale="40.0" offset="0.0">
					<parameter idref="CP1+2.kappa"/>
				</gammaPrior>
				<gammaPrior shape="0.05" scale="40.0" offset="0.0">
					<parameter idref="CP3.kappa"/>
				</gammaPrior>
				<uniformPrior lower="360.0" upper="10000.0">
					<parameter idref="treeModel.rootHeight"/>
				</uniformPrior>
				<generalizedSkyLineLikelihood idref="skyline"/>
				<exponentialMarkovLikelihood idref="eml1"/>
				
			</prior>
			<likelihood id="likelihood">
				<treeLikelihood idref="CP1+2.treeLikelihood"/>
				<treeLikelihood idref="CP3.treeLikelihood"/>
			</likelihood>
		</posterior>
		<operators idref="operators"/>
		<!-- write log to screen                                                     -->
		<log id="screenLog" logEvery="1000">
			<column label="Posterior" dp="4" width="12">
				<posterior idref="posterior"/>
			</column>
			<column label="Prior" dp="4" width="12">
				<prior idref="prior"/>
			</column>
			<column label="Likelihood" dp="4" width="12">
				<likelihood idref="likelihood"/>
			</column>
			<column label="rootHeight" sf="6" width="12">
				<parameter idref="treeModel.rootHeight"/>
			</column>
			<column label="ucld.mean" sf="6" width="12">
				<parameter idref="ucld.mean"/>
			</column>
		</log>
		<!-- write log to file                                                       -->
		<log id="fileLog" logEvery="1000" fileName="NS2B_serie9_B.log.txt">
			<posterior idref="posterior"/>
			<prior idref="prior"/>
			<likelihood idref="likelihood"/>
			<parameter idref="treeModel.rootHeight"/>
			<tmrcaStatistic idref="tmrca(FETBE)"/>
			<tmrcaStatistic idref="tmrca(FETBEaSTBE)"/>
			<tmrcaStatistic idref="tmrca(SSaLIV)"/>
			<tmrcaStatistic idref="tmrca(STBE)"/>
			<tmrcaStatistic idref="tmrca(WTBE)"/>
			<tmrcaStatistic idref="tmrca(WTBEaSSaLIV)"/>
			<tmrcaStatistic idref="tmrca(WTBEaSSaLIVaTS)"/>
			<parameter idref="skyline.popSize"/>
			<parameter idref="skyline.groupSize"/>
			<parameter idref="CP1+2.kappa"/>
			<parameter idref="CP3.kappa"/>
			<parameter idref="CP1+2.frequencies"/>
			<parameter idref="CP3.frequencies"/>
			<parameter idref="CP1+2.alpha"/>
			<parameter idref="CP3.alpha"/>
			<parameter idref="CP1+2.pInv"/>
			<parameter idref="CP3.pInv"/>
			<compoundParameter idref="allMus"/>
			<parameter idref="ucld.mean"/>
			<parameter idref="ucld.stdev"/>
			<rateStatistic idref="meanRate"/>
			<rateStatistic idref="coefficientOfVariation"/>
			<rateCovarianceStatistic idref="covariance"/>
			<treeLikelihood idref="CP1+2.treeLikelihood"/>
			<treeLikelihood idref="CP3.treeLikelihood"/>
			<generalizedSkyLineLikelihood idref="skyline"/>
			
		</log>
		<!-- write tree log to file                                                  -->
		<logTree id="treeFileLog" logEvery="1000" nexusFormat="true" fileName="NS2B_serie9_B.trees" sortTranslationTable="true">
			<treeModel idref="treeModel"/>
			<discretizedBranchRates idref="branchRates"/>
			<posterior idref="posterior"/>
		</logTree>
	</mcmc>
	
	<report>
		<property name="timer">
			<mcmc idref="mcmc"/>
		</property>
	</report>
	
</beast>
