Data from: High-resolution monitoring of Salish Sea estuarine communities through participatory science
Data files
Oct 22, 2025 version files 558.34 KB
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all_abundance_wide_format.csv
197.61 KB
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DailyMaxTemperature.csv
353.19 KB
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README.md
5.48 KB
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species_codes.csv
2.05 KB
Abstract
Agents of global change, such as climate disruptions, habitat loss, and biological invasions, affect nearshore and intertidal ecological communities in acute and chronic ways. Biological monitoring aims to track the changes in ecological communities over time, yet temporal mismatches between sampling regimes, environmental stressors, and corresponding ecological responses of interest often limit the utility of monitoring data for testing hypotheses related to these changes. Participatory science, alternatively “citizen science”, can increase the geographic and temporal scale of monitoring and can be a tool to address this limitation. By improving statistical power through higher resolution and a larger scale of data, participatory science programs can detect how global change alters highly dynamic ecological communities. In this study, we evaluate insights from a participatory science dataset (Washington Sea Grant Crab Team) on nearshore mobile epifaunal communities in the Salish Sea, how they differ across habitat types and over time, and how they responded to an atmospheric heatwave. Nearshore communities varied across channel, lagoon, and tideflat habitat types, with community metrics and species identities aligning with the environmental characteristics of each habitat type. Though these communities experience high seasonal variability, habitat type differences were consistent over the seven years of data collected. While some sites did experience extreme excursions of water temperature as a result of the 2021 atmospheric heatwave, neither short- nor long-term impacts were detected in the ecological communities monitored at the regional scale. Two factors are likely important in this conclusion: 1. We monitored mobile epifauna, which may be able to migrate to mitigate extreme events and 2. Water temperatures during the heatwave rarely exceeded those experienced at the sites during other times of year. The seasonal variability of the ecological communities observed in these dynamic environments suggests avoiding snapshot sampling in favor of an approach that offers high temporal resolution, as some participatory science programs can, to be able to accurately disentangle effects of acute stressors from the noise of natural variability.
Dataset DOI: 10.5061/dryad.0rxwdbsdt
Description of the data and file structure
This dataset is a subset of the Washington Sea Grant Crab Team monitoring network dataset compiled specifically to investigate whether pocket estuary mobile epifauna showed changes consistent with the 2021 atmospheric "Heat Dome". The Crab Team monitoring network, launched in 2015, was designed for early detection and tracking of invasive European green crab, along with monitoring of all other mobile epifauna observed in baited traps. The monitoring is conducted by trained volunteers and staff at partner agencies.
This dataset consists of species abundance observations aggregated by sample (site by month) for sites within the Salish Sea geography of Washington. Additionally, temperature records for a subset of sampled sites documents water temperature at the site-level.
Full study description is available in the manuscript: Rubinoff et al. 2025 Frontiers in Marine Science.
Files and variables
File: all_abundance_wide_format.csv
Description: Species abundance records from Crab Team monitoring sites aggregated by survey (month by site effort). Each site is categorized by morphology of pocket estuary habitat type
Variables
- Year: Year of sampling effort
- SiteID: Numerical site identification number
- Month: Month of sampling effort
- habtype: Type of classified pocket estuary habitat
- MEGR: Number of Metacarcinus gracilis (Graceful crab) in sample
- GAAC: Number of Gasterosteus aculeatus (3 spined stickelback) in sample
- HEOR: Number of Hemigrapsus oregonensis (hairy shore crab) in sample
- LEAR: Number of Leptocottus armatus (staghorn sculpin) in sample
- BROK: Number of broken back shrimps ( Pandalidae & Hippolytidae) in sample
- CYAG: Number of Cymatogaster aggregata (shiner perch) in sample
- HENU: Number of Hemigrapsus nudus (purple shore crab) in sample
- LOBE: Number of Lophopanopeus bellus (black clawed crab) in sample
- HECR: Number of Hermissenda crassicornus (opalescent nudibranch) in sample
- PAHI: Number of Pagurus hirsutiusculus (hairy hermit crab) in sample
- BAAT: Number of Batillaria attramentaria (Asian mud snail) in sample
- CAPR: Number of Cancer productus (red rock crab) in sample
- GOBY: Number of gobies (Gobiidae) in sample
- ELFS: Number of eel-like fishes (Pholidae and Stichaeidae) in sample
- SAND: Number of sand shrimp (Crangonidae) in sample
- SYLE: Number of bay pipefish (Syngnathus leptorhynchus) in sample
- ILOB: Number of Ilyanassa obsoleta (Atlantic dogwhelk) in sample
- BUBB: Number of bubble shells (Haminoea spp. AKA Haloa) in sample
- PONO: Number of Porichthys notatus (plainfin midshipman) in sample
- SPID: Number of spider crabs (Majidae) in sample
- PAGR: Number of Pagurus granosimanus (grainy handed hermit crab) in sample
- OLMA: Number of Oligocottus maculosus (tidepool sculpin ) in sample
- NASS: Number of Nassa snails (N. mendicus and N. fraterculus combined) in sample
- AMCO: Number of Amphissa columbiana (wrinkled amphissa) in sample
- LISI: Number of Littorina sitkana (Sitka periwinkle) in sample
- ARFE: Number of Artedius fenestralis (padded sculpin) in sample
- OCIN: Number of Ocinebrellus inornatus (Japanese oyster drill) in sample
- TECH: Number of Telmessus cheiragonus (hairy helmet crab) in sample
- NULA: Number of Nucella lamellosa (frilled dogwinkle) in sample
- COAS: Number of Cottus asper (prickly sculpin) in sample
- CAMA: Number of Carcinus maenas (European green crab) in sample
- PAMA: Number of Palaemon macrodactylus (Asian shrimp) in sample
- DEEX: Number of Dendraster excentricus (eccentric sand dollar) in sample
- STDR: Number of Strongylocentrotus droebachiensis (green sea urchin) in sample
- FLAT: Number of unidentified flatfish in sample
- LISC: Number of Littorina scutulata (checkered periwinkle) in sample
- MEMA: Number of Metacarcinus (AKA Cancer) magister (Dungeness crab) in sample
File: species_codes.csv
Description: Table key for species codes used in all_abundance_wide_format.csv.
Variables
- SpCode: Four-letter code used for shorthand of each species in taxonomy
- SpName: Scientific name or taxonomic group of species
- Group: Animal type
File: DailyMaxTemperature.csv
Description: Daily maximum water temperature values recorded at monitoring sites in June and July for all recorded years. These data were primary observations recorded with temperature loggers (either iButton DS 1921 or HOBO MX2201) on-site within 10meters of trap locations. Loggers were deployed so as to always be submerged in water.
Variables
- Index: Ordering variable
- mdy: Date of observation
- SiteNum: Numerical identification of site
- year: Observation year
- x: Water temperature value in degrees C
- md: Date of observation
- yd: Day of year
Code/software
Files are provided in .csv format which is broadly readable/viewable by many software types.
Access information
Other publicly accessible locations of the data:
