Elk resource selection and indicator species analysis
Data files
Oct 21, 2024 version files 2.05 MB
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fall_indicator.csv
257.23 KB
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Fall_RSF.csv
98.37 KB
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README.md
3.12 KB
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spring_indicator.csv
381.14 KB
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Spring_RSF.csv
103.04 KB
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summer_indicator.csv
786.46 KB
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Summer_RSF.csv
143.08 KB
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winter_indicator.csv
167.77 KB
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Winter_RSF.csv
108.94 KB
Oct 28, 2024 version files 2.05 MB
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fall_indicator.csv
257.23 KB
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Fall_RSF.csv
98.37 KB
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README.md
3.24 KB
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spring_indicator.csv
381.14 KB
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Spring_RSF.csv
103.04 KB
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summer_indicator.csv
786.46 KB
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Summer_RSF.csv
143.05 KB
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winter_indicator.csv
167.77 KB
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Winter_RSF.csv
108.94 KB
Abstract
Resource selection by animals varies depending on spatial and temporal context, thus it is important to account for these factors when conducting studies that examine this behavior relative to the availability and distribution of resources. Many resource selection studies combine fine-scale animal location data obtained using Global Positioning System (GPS) technology and coarse-scale, remotely sensed, spatial layers. Fewer studies combine fine-scale animal location data with vegetation data collected in the field, which can identify important fine-scale drivers of resource selection. Understanding fine-scale resource selection of ungulates inhabiting regions dominated by closed-canopy forests may provide important information regarding management actions that improve habitat quality. From April 2021–August 2022, we conducted vegetation surveys at locations (n = 1,294) used by 39 GPS-collared elk (Cervus canadensis) and at paired random locations (n = 2,509) available to elk. We used conditional logistic regressions to compare seasonal (spring, summer, fall, winter) vegetation characteristics between used and available locations. We also conducted a species indicator analysis to compare plant species found at used and available locations during peak foraging periods (dawn/dusk). Regardless of season, the probability of use by elk increased as tree basal area (m2/ha) decreased, and the presence of herbaceous plants increased. Clovers (Trifolium spp.) were indicators of locations used by elk during primary foraging periods regardless of season. Other plants that were indicators of locations used by elk during at least one season included purple-crown vetch (Securigera varia), bird’s foot-trefoil (Lotus corniculatus), and black medick (Medicago lupulina). This research highlights the importance of managed openings, ecotones, and other communities characterized by reduced tree cover and increased herbaceous plants to meet the foraging needs of elk in landscapes dominated by closed-canopy forests. Creating and maintaining managed herbaceous openings and restoring open-forest communities will likely facilitate elk population growth and expansion.
https://doi.org/10.5061/dryad.18931zd68
Description of the data and file structure
We completed 3803 vegetation surveys at 1294 used and 2509 available locations from 39 individuals (23 females; 16 males) across four seasons from April 2021 – August 2022. Vegetation surveys included collecting information on basal area and herbaceous and woody plant species from five 1m2 quadrants at each sampling location. Elk resource selection at elk used and available locations were analyzed with conditional logistic regressions for each season. Additionally, to determine indicator species of herbaceous plants and woody stems <0.5 m found in 1 m2 quadrants at locations used by elk and areas available but unused during foraging periods (hereafter referred to as site groups), the diagnostic index IndVal from package indicspecies (Dufrene and Legendre 2009) was calculated to assess species association between site groups.
Files and variables
File: Fall_RSF.csv, Spring_RSF.csv, Summer_RSF.csv, Winter_RSF.csv
Description:
Variables
- animal_ID: individual elk ID
- pointvegid: name of sampling location
- pointstatus: identifying if sampling location is a used (1) or available (0) sampling location.
- season: season vegetation survey was conducted in
- NEAR_DIST: distance to forest-open ecotone (m)
- clid: ID of paired used and available sampling locations
- Forb: Presence of forbs (1= present, 0 = absent)
- Graminoid: Presence of graminoids (1= present, 0 = absent)
- sex: male or female elk
- basalarea_m2_ha: basal area per m2/ha
- log_mast: logged term for basal area of mast producing trees (m2/ha)
- NEAR_scale: Scaled variable distance to forest-open ecotone
- log_mast_scale: Scaled variable "log_mast"
- label: used or available locations
- log_total_ba: logged variable- total basal area (m2/ha)
- log_totalbascale: logged variable NEAR_scale
- CON_DIST: Distance to mixed/evergreen forest ecotone (m)
- CON_DISTscale: scaled variable "CON_DIST"
- log_scale: logged variable "log_total_ba"
File: spring_indicator.csv, summer_indicator.csv, fall_indicator.csv, winter_indicator.csv
Description:
Variables
- pointvegid: name of sampling location
- species: species of plant found in quadrant
- Family: family of plant found in quadrant
- Genus: genus of plant found in quadrant
- Species_epithet:species epithet
- type:catogorizing plants into forb, graminoid, woody vegetation variables
- season:season data was collected in
- Center: Plants found in center quadrant
- N: Plants found in north quadrant
- E: Plants found in east quadrant
- S: Plants found in south quadrant
- W: Plants found in west quadrant
- pointstatus: used or available location
- sex: male or female elk
- behavior: foraging period
- grouped_sp: plants grouped into family, genus, or species
- total: mean abundance of plants in quadrant
Version changes
Oct-2024: Corrected a mislabel in pointvegID/sex for elk 21033 and 20252 in summer_rsf.csv
Code/software
R 4.1.1 was used for the analysis of this data.
Detailed scripts are included as R Markdown files.
