Century-long recovery of mycorrhizal interactions in European beech forests after mining
Data files
Mar 05, 2026 version files 39.97 KB
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ECM_matrix.csv
20.70 KB
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ECM_taxonomy.csv
14.60 KB
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README.md
3.32 KB
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soil_properties.csv
1.36 KB
Abstract
Ecological restoration strategies are emerging globally to counteract biodiversity loss and ecosystem degradation. However, restored ecosystems may not reach undisturbed biodiversity and functionality. One reason of this limited success may be a focus on short-term recovery of diversity, composition, or isolated functions. These simplified metrics may underestimate the real time ecosystems need to recover. Thus, studies of more complex metrics, like biotic interactions, at larger timescales, are essential to understand ecosystem recovery.
Using molecular identification, we assessed the recovery of the interactions between ectomycorrhizal (EcM) fungi and European beech (Fagus sylvatica L.) in two opencast iron mines in use since the fourteenth century and abandoned over 107 and 148 years.
Species richness, species diversity, Basidiomycota/Ascomycota abundance ratio and taxonomic distinctness of EcM fungi recovered to undisturbed values, whereas species composition was still different. Certain fungal functional traits (i.e. exploration and sporocarp types) also reached undisturbed values. Differences in soil pH and NH4+ affected the composition of the EcM communities associated with beech, suggesting that mining caused a long-term impact in soil biogeochemistry, that directly impacted beech-EcM interactions.
Mycorrhizal interactions require more than 150 years to recover following mining. Contrary to the rapid recovery response provided by simple metrics like species richness, recovery metrics with more ecological information, like the identity of plant-EcM interactions, may be still capturing signals of incomplete recovery.
Dataset DOI: 10.5061/dryad.2rbnzs7xv
Description of the data and file structure
This dataset includes four datafiles used in this publication:
Title: Century-long recovery of mycorrhizal interactions in European beech forests after mining
Authors list: Asun Rodríguez-Uña, Isabel Salcedo, Susana Rodríguez‑Echeverría, David Moreno-Mateos
Published in Plant and Soil on 1 May 2024, https://link.springer.com/article/10.1007/s11104-024-06665-z
Corresponding author: Asun Rodríguez-Uña (ar2190@cam.ac.uk, asun.rodez@gmail.com)
Data corresponds to soil and root samples collected in spring and autumn from beech trees in two abandoned mines and in the preserved surroundings.
Files and variables
File: ECM_matrix.csv
Description: This file contains the number of root tips of each ectomycorrhizal fungal OTU identified in each sample.
Variables
- season: factor variable with two levels. Sampling campaign: S = spring or A = autumn.
- mine: factor variable with three levels. Name of the sampling site: S = mine 1, A = mine 2, O = outside the mines.
- tree: character variable. Unique identifier of each sampled tree.
- rest of the columns -> numerical variables. Number of root tips of each ectomycorrhizal fungal OTU identified in each sample, unitless.
File: ECM_taxonomy.csv
Description: This file contains the taxonomy and functional traits assigned to each ectomycorrhizal fungal OTU.
Variables
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phylum: character variable indicating the phylum of each ectomycorrhizal fungal OTU.
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class: character variable indicating the class of each ectomycorrhizal fungal OTU.
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order: character variable indicating the order of each ectomycorrhizal fungal OTU.
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family: character variable indicating the family of each ectomycorrhizal fungal OTU.
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genus: character variable indicating the genus of each ectomycorrhizal fungal OTU.
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final_taxonomy: character variable. Final taxonomy at the species level assigned to each ectomycorrhizal fungal OTU.
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reproduction: factor variable with five levels (corticioid, gasteroid, pezizoid,
stipitate or no sporocarp). Sporocarp type of each ectomycorrhizal fungal OTU.
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exploration: factor variable with three levels (contact-short, medium, long). Exploration type of the hyphae of each ectomycorrhizal fungal OTU.
File: soil_properties.csv
Description: This file contains soil biogeochemistry for each sampled tree in mine 1, mine 2 and outside the mines.
Variables
- mine: factor variable with three levels. Name of the sampling site: S = mine 1, A = mine 2, O = outside the mines.
- tree: character variable. Unique identifier of each sampled tree.
- C: numerical variable. Percentage of total carbon.
- N: numerical variable. Percentage of total nitrogen.
- pH: numerical variable. Soil pH (unitless).
- PO4: numerical variable. Olsen phosphorous in ppm.
- NH4: numerical variable. Ammonium concentration in mg kg-1.
- NO3: numerical variable. Nitrate concentration in mg kg-1.
- age: numerical variable. Tree age in years.
