Ice gliding diatoms establish record-low temperature limits for motility in a eukaryotic cell
Data files
Aug 25, 2025 version files 1.88 GB
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adhesion_ice_diatoms_on_glass_exp1.zip
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adhesion_ice_diatoms_on_glass_exp2.zip
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adhesion_ice_diatoms_on_glass_exp3.zip
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adhesion_ice_diatoms_on_ice_exp1.zip
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adhesion_ice_diatoms_on_ice_exp2.zip
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adhesion_ice_diatoms_on_ice_exp3.zip
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adhesion_temperate_diatoms_on_glass_exp1.zip
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adhesion_temperate_diatoms_on_glass_exp2.zip
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adhesion_temperate_diatoms_on_glass_exp3.zip
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adhesion_temperate_diatoms_on_ice_1mPa.zip
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ice_diatom_-10C_annotated_raw_movie_1.mp4
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ice_diatom_-15C_annotated_raw_movie_1.mp4
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ice_diatom_-1C_annotated_raw_movie_1.mp4
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ice_diatom_-2C_annotated_raw_movie_2.mp4
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ice_diatom_-3C_annotated_raw_movie_1.mp4
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ice_diatom_-5C_annotated_raw_movie_1.mp4
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ice_diatom_-5C_annotated_raw_movie_2.mp4
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ice_diatom_-7C_annotated_raw_movie_1.mp4
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ice_diatom_-7C_annotated_raw_movie_2.mp4
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ice_diatom_-8C_annotated_raw_movie_1.mp4
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ice_diatom_0C_annotated_raw_movie_1.mp4
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ice_diatom_0C_annotated_raw_movie_2.mp4
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ice_diatom_10C_annotated_raw_movie_1.mp4
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ice_diatom_12C_annotated_raw_movie_1.mp4
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ice_diatom_12C_annotated_raw_movie_2.mp4
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ice_diatom_18C_annotated_raw_movie_1.mp4
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ice_diatom_1C_annotated_raw_movie_1.mp4
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ice_diatom_20C_annotated_raw_movie_1.mp4
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ice_diatom_22C_annotated_raw_movie_1.mp4
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ice_diatom_3C_annotated_raw_movie_1.mp4
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ice_diatom_3C_annotated_raw_movie_2.mp4
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ice_diatom_6C_annotated_raw_movie_1.mp4
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ice_diatom_6C_annotated_raw_movie_2.mp4
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images_for_PIV_40X_3.2fps.zip
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plottrajectoryoftracerparticles.m
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README.md
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temperate_diatom_-1C_annotated_raw_movie_1.mp4
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temperate_diatom_-1C_annotated_raw_movie_3.mp4
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temperate_diatom_-3C_annotated_raw_movie_3.mp4
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temperate_diatom_-5C_annotated_raw_movie_3.mp4
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temperate_diatom_0C_annotated_raw_movie_1.mp4
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temperate_diatom_0C_annotated_raw_movie_2.mp4
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temperate_diatom_0C_annotated_raw_movie_3.mp4
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temperate_diatom_12C_annotated_raw_movie_1.mp4
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temperate_diatom_12C_annotated_raw_movie_2.mp4
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temperate_diatom_12C_annotated_raw_movie_3.mp4
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temperate_diatom_15C_annotated_raw_movie_1.mp4
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temperate_diatom_17C_annotated_raw_movie_3.mp4
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temperate_diatom_18C_annotated_raw_movie_2.mp4
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temperate_diatom_1C_annotated_raw_movie_3.mp4
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temperate_diatom_20C_annotated_raw_movie_1.mp4
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temperate_diatom_20C_annotated_raw_movie_3.mp4
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temperate_diatom_22C_annotated_raw_movie_2.mp4
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temperate_diatom_25C_annotated_raw_movie_1.mp4
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temperate_diatom_25C_annotated_raw_movie_2.mp4
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temperate_diatom_25C_annotated_raw_movie_3.mp4
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temperate_diatom_28C_annotated_raw_movie_1.mp4
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temperate_diatom_28C_annotated_raw_movie_2.mp4
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temperate_diatom_30C_annotated_raw_movie_2.mp4
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temperate_diatom_30C_annotated_raw_movie_3.mp4
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temperate_diatom_32C_annotated_raw_movie_1.mp4
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temperate_diatom_34C_annotated_raw_movie_2.mp4
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temperate_diatom_36C_annotated_raw_movie_1.mp4
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temperate_diatom_38C_annotated_raw_movie_1.mp4
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temperate_diatom_3C_annotated_raw_movie_1.mp4
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temperate_diatom_3C_annotated_raw_movie_3.mp4
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temperate_diatom_42C_annotated_raw_movie_1.mp4
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temperate_diatom_6C_annotated_raw_movie_1.mp4
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temperate_diatom_6C_annotated_raw_movie_2.mp4
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temperate_diatom_6C_annotated_raw_movie_3.mp4
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temperature_dependent_speed_of_ice_diatoms.xlsx
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Tracer_particle_moving_in_ventral_region_1.mp4
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Tracer_particle_moving_in_ventral_region_2.mp4
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Traction_force_microscopy_annotated_raw_movie.mp4
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traction_forces.mat
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velocity_speed.m
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Abstract
Despite periods of permanent darkness and extensive ice coverage in polar environments, photosynthetic ice diatoms display a remarkable capability of living inside the ice matrix. How these organisms navigate such hostile conditions with limited light and extreme cold remains unknown. Using a custom sub-zero temperature microscope during an Arctic expedition, we present the discovery of motility at record-low temperatures in a Eukaryotic cell. By characterizing the gliding motility of several ice diatom species, collected from ice cores in the Chukchi Sea, we record that they retain motility at temperatures as low as –15 °C. Remarkably, ice diatoms can glide on ice substrates, a capability absent in temperate diatoms of the same genus. This unique ability arises from adaptations in extracellular mucilage that allow ice diatoms to adhere to ice, essential for gliding. Even on glass substrates where both cell types retain motility at freezing temperatures, ice diatoms move an order of magnitude faster, with their optimal motility shifting toward colder temperatures. Combining field and laboratory experiments with thermo-hydrodynamic modeling, we reveal adaptive strategies that enable gliding motility at extreme cold temperatures. These strategies involve increasing internal energy efficiency with minimal changes in heat capacity and activation enthalpy, and reducing external dissipation by minimizing the temperature sensitivity of mucilage viscosity. The discovery of diatoms' ice gliding motility opens new routes for understanding their survival within a harsh ecological niche and their migratory responses to rapid environmental changes. Our work highlights the robust adaptability of ice diatoms in one of Earth's most extreme settings.
Dataset DOI: 10.5061/dryad.3xsj3txt2
Description of the data and file structure
These datasets contain measurements supporting the discovery of ice gliding motility of diatoms in the Arctic. Data were collected during a 45-day expedition in the Chukchi Sea and through subsequent laboratory experiments. The dataset is organized into three categories:
- Adhesion Strength Measurements: Data from experiments measuring the adhesion force of diatoms on different surfaces.
- Gliding Motility Assays: Video recordings and summary data of diatom motility across a wide range of temperatures.
- Particle-Image Velocimetry, Particle-Tracking Velocimetry and Traction-Force Microscopy: Data used to visualize fluid flow, ventral region flow, and measure the physical forces exerted by diatoms.
1. Adhesion Strength Measurements
This section contains data from experiments measuring the adhesion strength of diatoms.
File Naming Convention:
The ZIP archives for adhesion data follow this structure: adhesion_[diatom_type]_on_[substrate]_exp[replicate_number].zip
[diatom_type]: Specifies the diatom population used.ice_diatoms: Arctic diatoms collected from the Chukchi Sea.temperate_diatoms: A laboratory-cultured temperate diatom species.
[substrate]: The surface the diatoms were adhering to (glassorice).[replicate_number]: The experimental replicate number (e.g.,exp1,exp2).
Example Content (inside each .zip file):
Each ZIP archive contains the image data for a single adhesion experiment. For example, adhesion_ice_diatoms_on_glass_exp1.zip would contain:
- A series of image files (e.g.,
.tiffor.png) from a flow-cell experiment at different shear stress (noted as[magnitude_of_shear_stress].png). - These images document the number of diatoms remaining on the substrate after being subjected to a specific fluid flow.
- The applied shear stress is annotated directly on the images for quantification of detachment forces.
Below are the adhesion files:
- adhesion_ice_diatoms_on_glass_exp1.zip
- adhesion_ice_diatoms_on_glass_exp2.zip
- adhesion_ice_diatoms_on_glass_exp3.zip
- adhesion_ice_diatoms_on_ice_exp1.zip
- adhesion_ice_diatoms_on_ice_exp2.zip
- adhesion_ice_diatoms_on_ice_exp3.zip
- adhesion_temperate_diatoms_on_glass_exp1.zip
- adhesion_temperate_diatoms_on_glass_exp2.zip
- adhesion_temperate_diatoms_on_glass_exp3.zip
- adhesion_temperate_diatoms_on_ice_1mPa.zip
2. Gliding Assay Movies and Data
This section includes video recordings of diatom (both temperate and ice) motility across a wide range of temperatures, a MATLAB script for analysis, and a summary spreadsheet.
File Naming Convention for Movies (.mp4):
The video files follow this structure: [diatom_type]_[temperature]C_annotated_raw_movie_[species_number].mp4
[diatom_type]:ice_diatomortemperate_diatom.[temperature]C: The experimental temperature in degrees Celsius (e.g.,-10C,22C).[species_number]: For example, [1] refers to the first ice diatom species we explored, Navicula sp.. Full species names are noted in each movie.
Description of Movie Files:
These are raw video files from light microscopy showing diatom gliding motility. The videos are "annotated," meaning they have text overlays with key experimental parameters burned into the frames, typically including the temperature (°C), a micron scale bar, and a time scale.
Associated Data and Code Files:
temperature_dependent_speed_of_ice_diatoms.xlsx: An Excel spreadsheet containing the summarized gliding speed data derived from the motility videos. The columns are as follows:- temperature (°C): The temperature at which motility was measured.
- mean speed (μm s⁻¹) (movie-level mean): The mean gliding speed of diatoms.
- standard error over experimental replicates: The standard error calculated across the different experiments.
- tracked cells: The number of individual cells tracked.
- experiment replicates: The number of experimental replicates performed.
- tracking time: The duration over which the cells were tracked.
velocity_speed.m: A MATLAB script used to analyze diatom tracks from their X,Y coordinates over time to calculate the average gliding speed.
Note on Usage: This script requires an input file (e.g., sum.xlsx) that users can generate by processing the raw .mp4 movie files with particle tracking software (ImageJ/Fiji with the TrackMate plugin).
The files below are movies, code and excel data of gliding assays:
- ice_diatom_-10C_annotated_raw_movie_1.mp4
- ice_diatom_-15C_annotated_raw_movie_1.mp4
- ice_diatom_-1C_annotated_raw_movie_1.mp4
- ice_diatom_-2C_annotated_raw_movie_2.mp4
- ice_diatom_-3C_annotated_raw_movie_1.mp4
- ice_diatom_-5C_annotated_raw_movie_1.mp4
- ice_diatom_-5C_annotated_raw_movie_2.mp4
- ice_diatom_-7C_annotated_raw_movie_1.mp4
- ice_diatom_-7C_annotated_raw_movie_2.mp4
- ice_diatom_-8C_annotated_raw_movie_1.mp4
- ice_diatom_0C_annotated_raw_movie_1.mp4
- ice_diatom_0C_annotated_raw_movie_2.mp4
- ice_diatom_10C_annotated_raw_movie_1.mp4
- ice_diatom_12C_annotated_raw_movie_1.mp4
- ice_diatom_12C_annotated_raw_movie_2.mp4
- ice_diatom_18C_annotated_raw_movie_1.mp4
- ice_diatom_1C_annotated_raw_movie_1.mp4
- ice_diatom_20C_annotated_raw_movie_1.mp4
- ice_diatom_22C_annotated_raw_movie_1.mp4
- ice_diatom_3C_annotated_raw_movie_1.mp4
- ice_diatom_3C_annotated_raw_movie_2.mp4
- ice_diatom_6C_annotated_raw_movie_1.mp4
- ice_diatom_6C_annotated_raw_movie_2.mp4
- temperate_diatom_-1C_annotated_raw_movie_1.mp4
- temperate_diatom_-1C_annotated_raw_movie_3.mp4
- temperate_diatom_-3C_annotated_raw_movie_3.mp4
- temperate_diatom_-5C_annotated_raw_movie_3.mp4
- temperate_diatom_0C_annotated_raw_movie_1.mp4
- temperate_diatom_0C_annotated_raw_movie_2.mp4
- temperate_diatom_0C_annotated_raw_movie_3.mp4
- temperate_diatom_12C_annotated_raw_movie_1.mp4
- temperate_diatom_12C_annotated_raw_movie_2.mp4
- temperate_diatom_12C_annotated_raw_movie_3.mp4
- temperate_diatom_15C_annotated_raw_movie_1.mp4
- temperate_diatom_17C_annotated_raw_movie_3.mp4
- temperate_diatom_18C_annotated_raw_movie_2.mp4
- temperate_diatom_1C_annotated_raw_movie_3.mp4
- temperate_diatom_20C_annotated_raw_movie_1.mp4
- temperate_diatom_20C_annotated_raw_movie_3.mp4
- temperate_diatom_22C_annotated_raw_movie_2.mp4
- temperate_diatom_25C_annotated_raw_movie_1.mp4
- temperate_diatom_25C_annotated_raw_movie_2.mp4
- temperate_diatom_25C_annotated_raw_movie_3.mp4
- temperate_diatom_28C_annotated_raw_movie_1.mp4
- temperate_diatom_28C_annotated_raw_movie_2.mp4
- temperate_diatom_30C_annotated_raw_movie_2.mp4
- temperate_diatom_30C_annotated_raw_movie_3.mp4
- temperate_diatom_32C_annotated_raw_movie_1.mp4
- temperate_diatom_34C_annotated_raw_movie_2.mp4
- temperate_diatom_36C_annotated_raw_movie_1.mp4
- temperate_diatom_38C_annotated_raw_movie_1.mp4
- temperate_diatom_3C_annotated_raw_movie_1.mp4
- temperate_diatom_3C_annotated_raw_movie_3.mp4
- temperate_diatom_42C_annotated_raw_movie_1.mp4
- temperate_diatom_6C_annotated_raw_movie_1.mp4
- temperate_diatom_6C_annotated_raw_movie_2.mp4
- temperate_diatom_6C_annotated_raw_movie_3.mp4
- velocity_speed.m
- temperature_dependent_speed_of_ice_diatoms.xlsx
3. Particle-Image Velocimetry (PIV), Particle-Tracking Velocimetry (PTV) and Traction-Force Microscopy (TFM)
This section includes data used to visualize the fluid flow generated by diatoms and to measure the forces they exert on their substrate.
File Descriptions:
images_for_PIV_40X_3.2fps.zip: A ZIP archive containing a pair of two .pngimages. This image pair represents the start and end states for a single PIV displacement analysis. The images were captured at 40X magnification with a time interval corresponding to 3.2 frames per second.plottrajectoryoftracerparticles.m: A MATLAB script that plots the trajectories of tracer particles in the ventral region (PTV).Tracer_particle_moving_in_ventral_region_1.mp4&..._2.mp4: Videos showing the movement of fluorescent tracer beads in the fluid near the ventral (underside) region of a diatom, visualizing the flow field.Traction_force_microscopy_annotated_raw_movie.mp4: A video showing a diatom on a flexible gel containing fluorescent beads. The displacement of the beads is used to calculate traction forces. Annotations include a scale bar and time scale.traction_forces.mat: A MATLAB data file (.mat) containing the processed TFM data. When loaded into MATLAB, it creates a single variable named traction.-
traction: This is a cell array where each cell corresponds to one frame of the analysis.
Each cell contains a struct with the following four fields for that specific frame:
tx: An M x N matrix of the calculated traction force in the x-direction (in Pascals).ty: An M x N matrix of the calculated traction force in the y-direction (in Pascals).X: An M x N matrix of the corresponding x-coordinates of the grid (in meters).Y: An M x N matrix of the corresponding y-coordinates of the grid (in meters).
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The datasets below are measurements of particle-image velocimetry (PIV), ventral flow and traction-force microscopy (TFM):
- images_for_PIV_40X_3.2fps.zip
- plottrajectoryoftracerparticles.m
- Tracer_particle_moving_in_ventral_region_1.mp4
- Tracer_particle_moving_in_ventral_region_2.mp4
- Traction_force_microscopy_annotated_raw_movie.mp4
- traction_forces.mat
