Resilient by nature: Managed rearing does not erode physiochemical tolerances of an extremophile fish
Data files
Jan 07, 2026 version files 56.96 KB
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env_2025.xlsx
9.61 KB
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Lab_adapted_loe.xlsx
20.94 KB
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LOE_labadapted_final.Rmd
24.29 KB
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README.md
2.12 KB
Abstract
Populations in managed care are valuable resources that complement in situ conservation efforts, but adaptation to captive conditions and other domestication effects present concerns for conservation. Many populations of fish adapted to sulfide springs are highly endemic and imperiled, potentially benefiting from ex situ conservation efforts. However, it is challenging to maintain natural conditions in the laboratory as hydrogen sulfide (H2S) is highly toxic and coincides with severe hypoxia. Here, we tested whether long-term standardized rearing of sulfide spring fishes leads to the loss of H2S and hypoxia tolerances. We compared the tolerances of Poecilia mexicana (Poeciliidae) from sulfidic and non-sulfidic habitats that were reared in the laboratory for 18 years and wild-caught fish from the same sites. Both H2S and hypoxia tolerances were maintained in laboratory-reared fish from the sulfidic habitat. Additionally, fish from a non-sulfidic cave site, evolutionarily derived from a sulfidic population, exhibited higher H2S and hypoxia tolerances than fish from the non-sulfidic surface site. While domestication can lead to the loss of adaptations to extreme environmental conditions, our research indicates this is not a concern in laboratory stocks of P. mexicana, which retained tolerance of H2S and hypoxia despite not experiencing these stressors for ~40 generations.
Dataset DOI: 10.5061/dryad.4qrfj6qqg
Description of the data and file structure
This dataset includes measures of hypoxia and hydrogen sulfide tolerance in laboratory-reared and wild-caught populations of Poecilia mexicana (Lab_adapted_loe.xlsx) and environmental conditions at the collection site measured in 2025 (env_2025.xlsx). The two Excel files are analyzed using the R script LOE_labadapted_final.Rmd.
Files and variables
File: Lab_adapted_loe.xlsx
Description: This dataset includes information on the tolerance trials for wild-caught and laboratory-reared fish.
Variables:
- Date: Date of trial
- Time: Time of trial
- Trial: Trial number
- Trial_Type: Type of trial (hypoxia tolerance or hydrogen sulfide tolerance)
- Pop: Population= PS5, Luna, PS10, PS2, Oxo, PS13, Bonita
- LOE: time until loss of equilibrium (s)
- SL_mm: Standard length (measured from snout to caudal peduncle in mm)
- Habitat: Habitat of origin of fish (Sulfidic Cave, Non-sulfidic cave, or Non-Sulfidic surface)
- Location: Sampling location (Lab=laboratory-reared, Field=Wild-caught)
- Survival: Did fish last the entire time of the trial (62 minutes) 0= lost equilibrium, 1= did not lose equilibrium
- Notes: notes about the trial
File: env_summary.xlsx
Description: This dataset includes environmental information collected at the sites in 2025.
Variables:
- Population: Site where environmental variables were collected (Bonita, Luna, or PS10)
- Date: Collection date
- Temperature: Temperature measured in °C
- DO: Dissolved oxygen measured in mg/L
- ph: pH
- Conductivity: Specific conductivity measured in µS/cm
- Sulfide: total sulfides measured in µM; negative values indicate that sulfides were not detectable in the sample.
File: LOE_labadapted_final.Rmd
Description: This R script is used to analyze the two Excel files.
Code/software
This data was analyzed using R version 4.5.0.
