Data for: Mechanistic insights into TTLL11 polyglutamylase-mediated primary tubulin chain elongation
Data files
Aug 20, 2025 version files 54.90 GB
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18O.zip
2.89 GB
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alpha_d3.zip
3.09 GB
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alpha_detyr.zip
4.49 GB
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alpha_HEK_MTs.zip
3.57 GB
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alpha_Tyr.zip
3.80 GB
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beta_tubulin_d2d3.zip
9.07 GB
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beta_tubulins.zip
11.88 GB
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cryosparc_P35_J257_006_volume_map_hancer_highRes.mrc
442.37 MB
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fragmentation_data_hMTs.zip
3.38 GB
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fragmentation_data.zip
5.61 GB
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immunofluor_intens.zip
4.36 GB
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README.md
2.46 KB
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TIRF_TTLL11_variants.zip
2.33 GB
Abstract
Microtubules (MTs) undergo diverse posttranslational modifications that regulate their structural and functional properties. Among these, polyglutamylation—a dominant and conserved modification targeting unstructured tubulin C-terminal tails—plays a pivotal role in defining the tubulin code. Here, we describe a mechanism by which tubulin tyrosine ligase–like 11 (TTLL11) expands and diversifies the code. Cryo–electron microscopy revealed a unique bipartite MT recognition strategy wherein TTLL11 binding and catalytic domains engage adjacent MT protofilaments. Biochemical and cellular assays identified previously uncharacterized polyglutamylation patterns, showing that TTLL11 directly extends the primary polypeptide chains of α-and β-tubulin in vitro, challenging the prevailing paradigms emphasizing lateral branching. Moreover, cell-based and in vivo data suggest a cross-talk between polyglutamylation and the detyrosination/tyrosination cycle likely linked to the TTLL11-mediated elongation of the primary α-tubulin chain. These findings unveil an unrecognized layer of complexity within the tubulin code and offer mechanistic insights into the molecular basis of functional specialization of MT cytoskeleton.
Dataset DOI: 10.5061/dryad.6djh9w1dj
Description of the data and file structure
All data were acquired to describe the structure and functions of TTLL11 polyglutamylase. Many methods were used, including cryo-EM, mass spectrometry, TIRF microscopy, and cell-based assays.
Files and variables
File: TTLL11_MT_complex_structure_(1).zip
Description: model of the TTLL11/microtubules complex and the deposition protocol from the RCSB database
File: cryosparc_P35_J257_006_volume_map_hancer_highRes.mrc
Description: map of the TTLL11/microtubules complex from cryo-EM
File: 18O.zip
Description: MS data of glutamylation by TTLL11 and 18O labeled glutamate
File: TIRF_TTLL11_variants.zip
Description: TIRF microscopy image of TTLL11 variants binding to microtubules
File: fragmentation_data_hMTs.zip
Description: mass spectrometry data of TTLL11 glutamylated human microtubules of beta tubulin
File: alpha_d3.zip
Description: mass spectrometry data of TTLL11 glutamylated delta3 microtubules
File: immunofluor_intens.zip
Description: data from fluorescence microscopy of neurons
File: alpha_detyr.zip
Description: mass spectrometry data of TTLL11 glutamylated detyrosinated microtubules
File: alpha_HEK_MTs.zip
Description: mass spectrometry data of TTLL11 glutamylated human microtubules of alpha tubulin
File: alpha_Tyr.zip
Description: mass spectrometry data of TTLL11 glutamylated tyrosinated microtubules
File: fragmentation_data.zip
Description: tandem mass spectrometry data of glutamylated tubulin ends
File: beta_tubulin_d2d3.zip
Description: mass spectrometry data of TTLL11 glutamylated human microtubules of truncated beta tubulin
File: beta_tubulins.zip
Description: mass spectrometry data of TTLL11 glutamylated human microtubules of beta tubulin
Code/software
ImageJ - fluorescence microscopy data
ChimeraX - structural data
Data Analysis (Bruker) - mass spectrometry data - not free, mmass can be used instead for quantification data
Access information
Other publicly accessible locations of the data:
- structural data - PDB ID 9HQ4 and EMD-52338 at www.rcsb.org/ and www.ebi.ac.uk/emdb/
