Data from: Combining feather δ2H, mist netting, and eBird data to investigate post-breeding migration of neotropical passerines on the Guanahacabibes Peninsula, Cuba
Data files
Mar 06, 2026 version files 165.85 KB
-
Cuba_-_Assignment.R
18.92 KB
-
Cuba_-_eBirdST.R
24.96 KB
-
Hobson_cuba_featherd2h.csv
24.86 KB
-
Hobson_cuba_mistnetting.csv
65.78 KB
-
Hobson_cuba_mistnettingeffort.csv
27.27 KB
-
README.md
4.07 KB
Abstract
The Gulf of Mexico hosts major migration pathways linking birds breeding in the United States and Canada to nonbreeding areas in Central and South America, but little is known about the role of western Cuba within these pathways. Long-term migration monitoring has been missing from western Cuba, but since 2015, a post-breeding migration banding station has operated annually at the tip of the Guanahacabibes Peninsula. Our objective was to investigate patterns of post-breeding migration in western Cuba, combining multiple sources of data to examine connectivity and timing of migration for 15 passerine species. We used feather stable-hydrogen isotopes (δ2Hf) to estimate breeding origins and used constant-effort mist netting and eBird Status and Trends relative abundance estimates to examine post-breeding migration and arrival timing in Cuba and the surrounding regions. The majority of species had southeastern origins (e.g., Setophaga ruticilla [American Redstart]), which is consistent with the breeding distribution of the most frequently encountered species in Cuba during the stationary nonbreeding period. Origins among boreal breeding species were more varied than expected, assuming parallel migration, with an unexpectedly high representation of northwestern breeding populations in species like Parkesia novaboracensis (Northern Waterthrush) and broad continent-wide origins in species like Catharus ustulatus (Swainson’s Thrush). Comparing the timing of migration in Cuba to the surrounding regions, we found evidence supporting the movement of migrants through western Cuba to the Yucatán Peninsula/ Central America for nine species. Although these patterns are speculative, and eBird Status and Trends data were highly variable, these results indicate that western Cuba, and the Guanahacabibes Peninsula in particular, is a region used by several species of Neotropical migrant passerines during post-breeding migration. More research is needed on stopover ecology in Cuba and targeted VHF radio tagging within the Gulf of Mexico to better understand how migratory birds use this important area during post-breeding migration.
Dataset DOI: 10.5061/dryad.6hdr7srf4
Description of the data and file structure
Data and R code necessary to replicate the analyses from Hobson et al. (XXXX) - Combining feather δ2H, mist netting, and eBird data to investigate post-breeding migration of Neotropical migrants on the Guanahacabibes Peninsula, Cuba
Feather stable-hydrogen isotopes (δ2H), mist netting captures, and mist netting effort datasets for Neotropical migratory passerines capture on the Guanahacabibes Peninsula, Cuba (2019, 2022, 2023). For feather stable-hydrogen isotopes, our study species were Vireo griseus (White-eyed Vireo), V. olivaceus (Red-eyed Vireo), Dumetella carolinensis (Gray Catbird), Catharus minimus (Gray-cheeked Thrush), C. ustulatus (Swainson’s Thrush), Seiurus aurocapilla (Ovenbird), Parkesia novaboracensis (Northern Waterthrush), Mniotilta varia (Black-and-White Warbler), Limnothylipis swainsonii (Swainson’s Warbler), Leiothlypis peregrina (Tennessee Warbler), Setophaga americana (Northern Parula), S. citrina (Hooded Warbler), S. magnolia (Magnolia Warbler), S. ruticilla (American Redstart), and Passerina cyanea (Indigo Bunting).
Files and variables
File: Hobson_cuba_featherd2h.csv
Description: Feather stable-hydrogen isotope data for Neotropical migrant passerines capture on the Guanahacabibes Peninsula, Cuba (2019, 2022, 2023)
Variables
- iso.lab.id: Unique internal lab identifier (character)
- code: 4-letter alpha codes for the species (e.g., "AMRE" = American Redstart, "GCTH" = Gray-cheeked Thrush). See https://www.birdpop.org/docs/misc/Alpha_codes_tax.pdf for a complete list.
- dd: day of capture (integer)
- mm: month of capture (integer)
- yy: year of capture (integer)
- VSMOW: stable-hydrogen isotope value of feathers expressed in the typical delta notation in units of per mil (‰), and normalized on the Vienna Standard Mean Ocean Water (VSMOW) scale;
File: Hobson_cuba_mistnetting.csv
Description: Mist netting capture records (2019, 2022, 2023) at Cabo de San Antonio (21.865ºN, 84.949ºW) on the western tip of the Guanahacabibes Peninsula, Cuba
Variables
- dd: day of capture (integer)
- mm: month of capture (integer)
- yy: year of capture (integer)
- time: time of capture (hh:mm)
- code: 4-letter alpha codes for the species (e.g., "AMRE" = American Redstart, "GCTH" = Gray-cheeked Thrush). See https://www.birdpop.org/docs/misc/Alpha_codes_tax.pdf for a complete list.
File: Hobson_cuba_mistnettingeffort.csv
Description: Mist netting effort (2019, 2022, 2023) at Cabo de San Antonio (21.865ºN, 84.949ºW) on the western tip of the Guanahacabibes Peninsula, Cuba
Variables
- date: date of capture (dd-month-yy)
- net: net identifier
- open: net opening time (hh:mm)
- close: net closing time (hh:mm)
- hours: total net hours, for a given net and date (hours)
File: Cuba_-_Assignment.R
Description: R code to run stable isotope assignment based on feather stable-hydrogen isotope data. See associated manuscript for more details.
File: Cuba_-_eBirdST.R
Description: R code to run analysis of mist netting data paired with eBird Status and Trends relative abundance data based on feather stable-hydrogen isotope data. See associated manuscript for more details.
Code/software
For assignments, precipitation stable-hydrogen isoscapes should be accessed here: https://wateriso.utah.edu/waterisotopes/pages/data_access/ArcGrids.html
For eBird Status and Trends data, the most recent relative abundance data should be accessed from the ebirdst package in R.
Our study was part of a larger initiative to document the post-breeding migration of Neotropical migrant passerines through western Cuba. This program was organized by ECOVIDA (Centro de Investigaciones y Servicios Ambientales / Environmental Research and Services Center) and involved regular mist-netting operations at Cabo de San Antonio (21.865ºN, 84.949ºW) on the western tip of the Guanahacabibes Peninsula. This banding station consisted of 12 mist nets, open daily for five hours from 0700 to 1200, in semideciduous forest, open transitional areas, and coastal vegetation. Constant effort mist netting was performed in 2019 (September 11– November 4), 2022 (October 5 – 24), and 2023 (September 22 – October 28).
Our study species were Vireo griseus (White-eyed Vireo), V. olivaceus (Red-eyed Vireo), Dumetella carolinensis (Gray Catbird), Catharus minimus (Gray-cheeked Thrush), C. ustulatus (Swainson’s Thrush), Seiurus aurocapilla (Ovenbird), Parkesia novaboracensis (Northern Waterthrush), Mniotilta varia (Black-and-White Warbler), Limnothylipis swainsonii (Swainson’s Warbler), Leiothlypis peregrina (Tennessee Warbler), Setophaga americana (Northern Parula), S. citrina (Hooded Warbler), S. magnolia (Magnolia Warbler), S. ruticilla (American Redstart), and Passerina cyanea (Indigo Bunting). These 15 species were chosen to reflect the most common species captured at the Cabo de San Antonio banding station (i.e., those captured in all three years) that also had geographically distinct breeding ranges (e.g., boreal forest vs. eastern temperate forest), and those with nonbreeding grounds at least partially south/southwest of Cuba. Some additional exploratory sampling occurred on warbler species where fewer feathers were collected (n = 7 Helmitheros vermivorum [Worm-eating Warbler], n = 1 Protonotaria citrea [Prothonotary Warbler], n = 8 Geothlypis trichas [Common Yellowthroat], n = 3 Setophaga caerulescens [Black-throated Blue Warbler], n = 4 Setophaga pensylvanica [Chestnut-sided Warbler], n = 1 Setophaga tigrine [Cape May Warbler]). We have includedthise data here to encourage future use of these data.
Feathers were individually stored in paper coin envelopes prior to isotope analysis. In the laboratory, feather samples were soaked in 2:1 chloroform: methanol overnight, rinsed, and dried in a fume hood at ambient temperature. Feather barbs from the distal end of the feather were analyzed for stable hydrogen isotopes by weighing subsamples (0.35 mg) into silver capsules (Mettler Toledo XP9 Excellence Plus XP Micro Balance, Greifensee, Switzerland). Samples were assayed for~ δ2Hf~ at the Laboratory for Stable Isotope Science-Advanced Facility for Avian Research stable isotope facility at the University of Western Ontario. The sample carousel (Uni-Prep, Eurovector, Milan, Italy) was heated to 60ºC, evcuated and flushed with dry helium and then held under helium flow for the duration of an analytical run. The Uni-Prep was coupled with a Eurovector elemental analyzer and combusted at 1350ºC on a glassy carbon reactor. The resultant H2 gas was analyzed on a coupled Thermo Delta V Plus (Thermo Scientific, Bremen, Germany) continuous-flow isotope ratio mass spectrometer via a Conflo device (Thermo Scientific, Bremen, Germany). Sample results were expressed in the standard delta (δ) notation in parts per thousand ‰(‰ deviation from in-house keratin standards (CBS: -197‰; KHS: -54.1‰). The δ2Hf value of the non-exchangeable H fraction was derived according to the comparative equilibration approach (Wassenaar and Hobson 2003). Based on within-run (n = 5 each) keratin standards, measurement error was estimated to be ±2‰. All δ2Hf values were expressed relative to Vienna Standard Mean Ocean Water (VSMOW).
