Single molecule image sequences of Thermothielavioides terrestris AA9E (TtAA9E) on cellulose in oxygen scavenging systems
Data files
Oct 20, 2025 version files 8.27 GB
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apo_LPMO_1e4_1_MMStack_Default.ome.tif
1.59 GB
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apo_LPMO_1e4_ASC_1_MMStack_Default.ome.tif
1.59 GB
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apo_LPMO_pH5_1e4_Cel7A_1_MMStack_Default.ome.tif
53.15 MB
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Cy5-ttLPMO_1X_AC_hydrophobic_BSA_Blocked_085723.spe
791.15 MB
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Cy5-ttLPMO_1X_AC_hydrophobic_BSA_Blocked_092601.spe
265.82 MB
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Cy5-ttLPMO_1X_AC_hydrophobic_BSA_Blocked_094631.spe
14.16 MB
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Cy5-ttLPMO_5x_AC_hydrophobic_BSA_Blocked_134931.spe
160.96 MB
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Cy5-ttLPMO_5x_AC_hydrophobic_BSA_Blocked_135709.spe
157.81 MB
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Cy5-ttLPMO_5x_AC_hydrophobic_BSA_Blocked_141454.spe
158.34 MB
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Cy5-ttLPMO_5x_AC_hydrophobic_BSA_Blocked_142628.spe
159.39 MB
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Cy5-ttLPMO_5x_AC_hydrophobic_BSA_Blocked_143601.spe
160.44 MB
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Cy5apoLPMO_1e5dil_pH5_GOX_EDTA_ASC_reg2_MMStack_Pos0.ome.tif
1.58 GB
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Cy5apoLPMO_1e5dil_pH5_GOX_EDTA_reg2_MMStack_Pos0.ome.tif
1.58 GB
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Datafile_structure.csv
2.60 KB
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README.md
2.27 KB
Abstract
Purified and Cy5-labeled lytic polysaccharide monooxygenase (LPMO) Thermothielavioides terrestris AA9E (TtAA9E) interacting at the surface of crystalline cellulose fibrils were imaged by Total Internal Reflectance Fluorescence Microscopy (TIRFM) in two different oxygen scavenging systems: Glucose Oxidase-Catalase (GODCAT) and Protocatechuic Acid/Protocatechuate-3,4-dioxygenase (PCA/PCD). The datasets (movies) show how oxygen and hydrogen peroxide availability, and reductant type/availability impact specific binding of the LPMO to highly ordered cellulose fibrils.
Dataset DOI: 10.5061/dryad.9ghx3ffrh
Single-molecule fluorescence images of individual Cy5-labeled enzyme molecules binding and unbinding from cellulose fibrils were imaged using 488 nm and 637 nm excitation laser reflected by a multiline dichroic mirror (FF500/646-Di01, Semrock) and focused at the back aperture of a 1.49 NA 60X oil-immersion objective (Olympus) to provide total-internal-reflection (TIR) excitation at the cover glass / water interface across a ~50 µm diameter area in the object plane. Sample emission was collected and imaged by the same objective onto the 512x512-pixel sensor of an electron multiplying CCD (EMCCD) camera (Photonmax, Princeton Instruments). A 37 nm wide bandpass filter centered at 676 nm was used to isolate Cy5 fluorescence excited at 637 nm. For the binding time measurements, the overall magnification of the imaging system (73X) mapped each EMCCD pixel to a 220x220 nm area in the object plane. Relatively low power (~0.2 mW @ 637 nm) excitation was used to reduce the effect of Cy5 photobleaching on the binding time measurements. Under similar imaging conditions, fluorescence lifetimes of most (90%) of Cy5 fluorophores exhibited an extended characteristic decay time of 1101 s in the GODCAT oxygen scavenging buffer system (Supplemental Information 1). Image stacks were collected at EMCCD camera integration times of 1 second.
The table below indicate enzyme and reaction conditions associated with each datafile.
Description of the data and file structure
Descriptions of the data and file structure are provided in the attached Datafile_structure.csv
Code/software
Both .spe and .tif files contain image stacks (multiple images collected in sequence over a period of time) that can be directly opened in ImageJ (File->Open and browse to select file, or drag and drop). The image stacks can be played to watch movies of fluorescently-labeled cellulose binding and unbinding on the surface with cellulose fibrils. It is helpful to match brightness and contrast of the images (Image->Adjust->Brightness/Contrast) when comparing multiple data sets.
- Blossom, Benedikt M.; Goodwin, Peter M.; Angeltveit, Camilla Fløien et al. (2025). Investigation Into the Role of Reductants and Cosubstrates in Lytic Polysaccharide Monooxygenase Thermothielavioides terrestris AA9E Binding to Cellulose by Single‐Molecule Imaging. Biotechnology and Bioengineering. https://doi.org/10.1002/bit.70080
