Data from: Phase-dependent differential in vitro and ex vivo susceptibility of Aspergillus flavus and Fusarium keratoplasticum to azole antifungals
Data files
Aug 31, 2023 version files 4.02 KB
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JoF_Manuscript_Absorbance_Raw_Data.csv
733 B
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JoF_Manuscript_Corneal_Coverage_Raw_Data.csv
1.92 KB
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README.md
1.37 KB
Abstract
Fungal keratitis (FK) is an invasive infection of the cornea primarily associated with Aspergillus and Fusarium species. FK is treated empirically with a limited selection of topical antifungals with varying levels of success. Though clinical infections are typically characterized by a dense network of mature mycelium, traditional models used to test antifungal susceptibility of FK isolates exclusively evaluate susceptibility in fungal cultures derived from asexual spores known as conidia. The purpose of this study was to characterize differences in fungal response when topical antifungal treatment is initiated at progressive phases of fungal development. We compared efficacy of voriconazole and luliconazole against in vitro cultures of A. flavus and F. keratoplasticum at 0, 24, and 48 h of fungal development. Data from this assay is included here, reported as end-point absorbance values. A porcine cadaver corneal model was used to compare antifungal efficacy of voriconazole and luliconazole in ex vivo tissue cultures of A. flavus and F. keratoplasticum at 0, 24, and 48 h of fungal development. Data from this assay may be found here, reported as pixel counts of the determined area.
Absorbance of 96-well fungal culture is reported as a diagnostic of broth microdilution antifungal susceptibility testing. Corneal affected area is reported in pixel counts as a diagnostic of an ex vivo antifungal susceptibility model.
Description of the Data and file structure
Absorbance data is separated by fungal species, drug tested (VOR: voriconazole, LUL: luliconazole), and sample group. Sample groups include Control (no drug received), 0 h Incubation (drug received after 0 h incubation), 24 h Incubation (drug received after 24 h incubation), and 48 h Incubation (drug received after 48 h incubation). Absorbance values are reported as absorbance units (AU) measured at 490 nm. Each value represents a measurement taken from a single well of a 96-well plate.
Corneal coverage data is separated into equivalent fungal species, drug, and sample group columns. Sample groups are further divided into three measurements: affected area, total area, and proportion. Each set of measurements represents a single sample. Area values are reported as raw pixel counts obtained from ImageJ photo analysis. Proportion values are obtained through mathematical transformation using Microsoft Excel.
In vitro absorbance: Absorbance at 490 nm was measured following assay conclusion (Sunrise Microplate Reader, Tecan Group Ltd, Switzerland). A sample size of three wells (n=3) was included for each fungal/drug combination. Raw absorbance per well is reported.
Ex vivo corneal coverage: Corneas were photographed following assay conclusion (Nikon D200, AF-S FX Micro NIKKOR 105mm 1:2.8G ED Lens). Images were analyzed using ImageJ software to outline the total area/cornea and the affected area/cornea in pixels. Raw total and affected areas/cornea are reported alongside the proportion of affected to total area.
- Roberts, Darby; Salmon, Jacklyn; Cubeta, Marc A; Gilger, Brian C (2023). Phase-Dependent Differential In Vitro and Ex Vivo Susceptibility of Aspergillus flavus and Fusarium keratoplasticum to Azole Antifungals [Preprint]. MDPI AG. https://doi.org/10.20944/preprints202309.0403.v1
- Roberts, Darby; Salmon, Jacklyn; Cubeta, Marc A.; Gilger, Brian C. (2023). Phase-Dependent Differential In Vitro and Ex Vivo Susceptibility of Aspergillus flavus and Fusarium keratoplasticum to Azole Antifungals. Journal of Fungi. https://doi.org/10.3390/jof9100966
