Behavioral DiverCity: Individual differences in behavior change along an urbanization gradient
Data files
May 07, 2025 version files 182.23 KB
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aggressivite_online.rds
30.53 KB
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agressivite_persite_online.R
30.80 KB
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breathrate_online.rds
17.54 KB
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breathrate_persite_online.R
39.51 KB
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explo_online.rds
11.82 KB
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explo_persite_online.R
41.37 KB
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isadata.rds
7.15 KB
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README.md
3.50 KB
Abstract
Urbanization is occurring globally at an unprecedented rate and, despite the eco-evolutionary importance of individual variation in adaptive traits, we still have very limited insight on how phenotypic variation is modified by anthropogenic environmental change. Urbanization can increase individual differences in some contexts, but whether this is generalizable to behavioral traits, which directly affect how organisms interact with and respond to environmental variation, is not known. Here we examine variation across three behavioral traits (breath rate, handling aggression and exploration behaviour) in great tits Parus major along an urbanization gradient (n > 1000 phenotyped individuals accross nine years) to determine whether among-individual variance in behavior increases with the degree of urbanization and spatial heterogeneity. Urban birds were more aggressive and faster explorers than forest birds. They also displayed higher among-individual variation for breath rate and aggression (1.5 and 1.8 times increase, respectively), but lower among-individual variation for exploration (3.3 times decrease). Only individual variation in exploration clearly changed along the continuous urbanization gradient; individual differences in exploration declined with increasing impervious surface area. Collectively our results suggest that individuals in the city may have more diverse behavioral stress responses, yet display stronger similarity in their behavioral responses to novelty. Our results suggest that generalizations about urbanization’s impacts on behavioral variation are not appropriate. Instead our results suggest that urbanization can shape individual variation differently across behavioral functions and we may expect decreased individual diversity in urban birds for traits related to behavioral response to novelty.
Author: Laura Gervais
Overview
This repository contains datasets and R scripts used in the study of behavioural variation along an urbanization gradient in wild populations. The data include measures of aggressiveness, exploration, and breath rate, along with environmental and individual-level metadata.
1. Datasets
aggressivite_online.rds
Contains individual-level data on aggressiveness scores.
Variables:
agressivite: Aggressiveness score (range: 0–3, in 0.5 increments)lieu: Study site of capturerepet: Number of previous behavioural assayssex: Sex of the individual (1 = male, 2 = female)age_cat: Age category (Ad= adult,Juv= juvenile)heure_dec: Decimal hour when measurements were takendate: Julian day when measurements were takenobs_agr: Initials of the observer recording aggressivenessan: Year of the assaypropurban: Proportion of impervious surface within a 1000 m bufferpropurban100: Proportion of impervious surface within a 100 m bufferpropurban250: Proportion of impervious surface within a 250 m bufferbague: Unique identifier of the individual
explo_online.rds
Contains individual-level data on exploration scores.
Variables:
sauts: Number of flights and hops during the 4-minute exploration trialstation_corrected: Study site of captureprotocole_of: Protocol type used (oldornew)repet_OF: Number of previous behavioural assaysage: Age category (Ad= adult,Juv= juvenile)heure_RR_decimale: Decimal hour when measurements were takenjdate: Julian day when measurements were takenan: Year of the assaybague: Unique identifier of the individual
breathrate_online.rds
Contains individual-level data on breath rate.
Variables:
meanRR: Breath rate in seconds (time to complete 30 chest movements)station_corrected: Study site of captureprotocole_RR: Protocol type used (oldornew)rang_capture: Number of previous assayssexe: Sex of the individual (1 = male, 2 = female)age: Age category (Ad= adult,Juv= juvenile)heure_RR_decimale: Decimal hour when measurements were takenjdate: Julian day when measurements were takenobs_RR: Initials of the observer recording breath ratean: Year of the assaybague: Unique identifier of the individual
isadata.rds
Contains nestbox-level data on urbanization.
Variables:
NestboxID: Unique identifier of the nestboxpropurban: Proportion of impervious surface within a 1000 m bufferpropurban100: Proportion of impervious surface within a 100 m bufferpropurban250: Proportion of impervious surface within a 250 m buffer
2. Scripts
These R scripts are used to analyse the data. R is required to run them.
aggressivite_persite_online.R: Performs variance decomposition by site, variance comparison, and analysis of variance along the urbanization gradient for aggressiveness scores.explo_persite_online.R: Performs variance decomposition by site, variance comparison, and analysis of variance along the urbanization gradient for exploration scores.breathrate_persite_online.R: Performs variance decomposition by site, variance comparison, and analysis of variance along the urbanization gradient for breath rate.
Annotations and comments are provided throughout each script to guide interpretation and use.
