Data from: Dissecting factors behind temporal trends in the timing of breeding in two songbird species – evolutionary change or phenotypic plasticity?
Data files
Jun 06, 2025 version files 254.45 MB
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Animal_models
252.83 MB
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GT_pedigree_2021.csv
656.59 KB
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LD_data_GT_WT.csv
398.94 KB
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README.md
5.39 KB
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README.txt
6.76 KB
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WT_pedigree_2023.csv
547.65 KB
Abstract
Warming climate has led to significant phenological advances in many plant and animal populations. Whether these advances represent evolutionary responses or phenotypic plasticity remain typically unknown. Using 53 years long time-series of individually marked Great (Parus major) and Willow Tits (Poecile montanus), we investigated whether the significant breeding time advances in these species could be explained to result from evolutionary responses, phenotypic plasticity, or both. In the case of both species, we did not find any evidence for changes in breeding values for timing of breeding, suggesting that the observed changes do not have a genetic, and hence, evolutionary basis. In contrast, we found that annually fluctuating environmental effects explained most of the variation in first egg lay dates, suggesting that advances in breeding time were attributable to phenotypic plasticity. We further inferred that phenotypic plasticity in response to spring temperatures can fully explain the observed advancement of Great Tit phenology over time, whereas Willow Tits have advanced their phenology much beyond what would be expected from phenotypic plasticity in response to spring temperatures. The latter observation suggests that some other yet unidentified environmental factor, uncorrelated with spring temperatures, likely explains about half of the advancement in their breeding time.
GENERAL INFORMATION
This README file was updated on 3.4.2025
A. Paper associated with this archive
Citation: Vatka, Emma; Orell, Markku; Merilä, Juha (2025) Dissecting factors behind temporal trends in the timing of breeding in two songbird species – evolutionary change or phenotypic plasticity?
B. Originators
- Emma Vatka, Ecology and Genetics Research Unit, Faculty of Science, University of Oulu, & Research Programme in Organismal and Evolutionary Biology, Faculty of Biological and Environmental Sciences, University of Helsinki
- Markku Orell, Ecology and Genetics Research Unit, Faculty of Science, University of Oulu
- Juha Merilä, Research Programme in Organismal and Evolutionary Biology, Faculty of Biological and Environmental Sciences, University of Helsinki, & Area of Ecology & Biodiversity, School of Biological Sciences, The University of Hong Kong
C. Contact information
Emma Vatka
Ecology and Genetics Research Unit, Faculty of Science, University of Oulu, P.O. Box 8000, FI-90014 Oulu University, Finland
emma.vatka@oulu.fi
D. Dates of data collection
Years 1969-2021 and 1971-2023 for Great Tits and Willow Tits, respectively
E. Geographic Location(s) of data collection
Oulu, Finland (N 65°05’, E 25°33’)
F. Funding Sources
Kone Foundation (grant number 202008514), Research Council of Finland and the University of Oulu.
ACCESS INFORMATION
- Licenses/restrictions placed on the data or code: N/A
- Data derived from other sources: N/A
- Recommended citation for this data/code archive
Vatka, E., Orell, M. & Merilä, J. (2025) Data from: Dissecting factors behind temporal trends in the timing of breeding in two songbird species – evolutionary change or phenotypic plasticity?
https://doi.org/10.5061/dryad.cnp5hqcdx
DATA & CODE FILE OVERVIEW
Description of the data and file structure
Data of first egg laying dates from first clutches of individually marked Great Tits (Parus major) and Willow Tits (Poecile montanus) were collected near Oulu, Finland in years 1969 - 2021 and 1971 - 2023, respectively.
Pedigree files are constructed for animal model analyses with package MCMCglmm in R.
To be able to run the analyses of phenotypic plasticity, please download climate data on daily mean temperatures from Oulu airport observation station for a period of 01/01/1970 - 17/08/2023 from the Finnish Meteorological Institute open data web-service: (https://en.ilmatieteenlaitos.fi/download-observations). Create a file named "temperatures_climwin1.csv" and include two columns with the following names: "temperature" (this column has the daily mean ambient temperature, °C) and "Date" (in format dd/mm/yyyy).
Files and variables
File: Animal models.RData
Description: R data file including animal model objects built with the script 'script_Dissecting3.R'
File: LD_data_GT_WT.csv
Description: First egg laying dates of Great Tits and Willow Tits in Oulu, Finland
Variables
- animal;IND;Year;LD;dam;f.age;species;Date:
- animal: identity of the breeding female. Variable is used in animal models to link the data with the pedigree information.
- IND: identity of the breeding female. Variable is used to model permanent environmental effects experienced by a breeding female
- Year: breeding year
- LD: laying date of the first egg in a genuine first clutch as Maydays (1 = 1st of May)
- dam: identity of the breeding female. Used in analysis for temporal trends in the timing of breeding to control for pseudoreplication.
- f.age: age of the breeding female (as one year old (1), older (older) or unknown age (not.known))
- species: study species: GT = Great Tit Parus major, WT = Willow Tit Poecile montanus
- Date: date of the first egg laying date (dd/mm/yyyy), used in an analysis with 'slidingwin' in package 'climwin'
File: WT_pedigree_2023.csv
Description: Pedigree of individually marked Willow Tits in Oulu study area (data until 2023)
Variables
- animal;dam;sire:
- animal: identity of the bird individual
- dam: identity of the mother of the individual. 'NA' for missing information.
- sire: identity of the father of the individual. 'NA' for missing information.
File: GT_pedigree_2021.csv
Description: Pedigree of individually marked Great Tits in Oulu study area (data until 2021)
Variables
- animal;dam;sire:
- animal: identity of the bird individual
- dam: identity of the mother of the individual. 'NA' for missing information.
- sire: identity of the father of the individual. 'NA' for missing information.
Code/software
Data is in .csv files, can be viewed in, e.g., Notepad or Excel.
Code scripts and workflow: The script attached was used to produce the results in manuscript titled "Dissecting factors behind temporal trends in the timing of breeding in two songbird species – evolutionary change or phenotypic plasticity?" using program R.
SOFTWARE VERSIONS
R, version 4.0.4
R libraries:
lme4, version 1.1-26
MCMCglmm, version 2.30
coda, version 0.19-4
climwin, version 1.2.3
arules, version 1.6-6
