Cell-size-dependent responses of bacterial communities to warming in the alpine grasslands of the Qinghai-Tibet Plateau
Data files
Feb 05, 2026 version files 2.46 MB
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Bacteriaclassifications.txt
2.45 MB
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metadata.txt
4.47 KB
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Plantspeciesidentifications.txt
4.48 KB
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README.md
2.54 KB
Abstract
Cell size is a fundamental determinant of bacterial ecology, influencing community dynamics, physiological processes, and ecological interactions. However, the impacts of climate change—especially warming—on bacteria of varying cell sizes remain poorly understood, particularly in sensitive ecosystems such as alpine grasslands. In this study, we conducted an open-top chamber warming experiment (+1.3 °C) to investigate how warming affects bacterial communities across four distinct cell size categories (<0.4 μm, 0.4–3.0 μm, 3.0–5.0 μm, and >5.0 μm) in the alpine grasslands of the Qinghai-Tibet Plateau. Our results show that warming differentially impacts bacterial communities depending on cell size. Small bacteria (<0.4 μm) were more sensitive to warming, with increased richness and diversity, while larger bacteria (3.0–5.0 μm) experienced a decline in both diversity and richness. These shifts were accompanied by compositional changes, particularly within the <0.4 μm fraction, where phyla such as β-Proteobacteria, δ-Proteobacteria, Bacteroidetes, and Thermotogae decreased, while Actinobacteria increased. Additionally, warming decoupled the interactions between large bacteria and soil or plant components, while enhancing plant-bacterial coupling for small bacteria. Co-occurrence network analysis revealed that warming reduced the complexity and connectivity of small bacterial communities, making them less stable and more influenced by deterministic processes. In contrast, warming promoted drift and heterogeneous selection in large bacterial communities, highlighting divergent ecological responses based on cell size. These findings underscore the critical role of cell size in determining bacterial vulnerability to climate change, offering new insights into microbial community dynamics in response to global warming.
DOI:10.5061/dryad.crjdfn3gv
We have submitted our soil properties data (metadata.txt), Bacteria classifications information (Bacteriaclassifications.txt), and plant species identifications information (Plantspeciesidentifications.txt)
Descriptions
metadata
- PlotID: ID of plot
- Ecosystem type: The experimental ecosystem type
- Treatment: Warming or Non-warming
- Repetition: Repetition ID
- Soil total phosphorus (TP, g/kg): Soil total phosphorus concention in experimental plot
- Soil organic carbon (SOC, g/kg): Soil organic carbon concention in experimental plot
- Soil total nitrogen (TN, g/kg): Soil total nitrogen concention in experimental plot
- Soil ammonium (NH₄⁺, mg/kg): Soil ammonium concention in experimental plot
- Soil nitrate (NO₃⁻, mg/kg: Soil nitrate concention in experimental plot
- pH: Soil pH in experimental plot
- Soil bulk density: Soil bulk density in experimental plot
- Soil water content (%): Soil water content in experimental plot
- Plant aboveground biomass (g/m2): Plant aboveground biomass in experimental plot
- Plant underground biomass (g/m2): Plant underground biomass in experimental plot
- Plant richness: Plant richness in experimental plot
- Plant Shannon: Plant Shannon in experimental plot
- Plant Simpson: Plant Simpson in experimental plot
- Plant eveness: Plant eveness in experimental plot
Bacteriaclassifications
- ASVID: ID of amplicon sequence variants
- Kingdom: Biological taxonomy in kingdom level of amplicon sequence variants
- Phylum: Biological taxonomy in phylum level of amplicon sequence variants
- Class: Biological taxonomy in class level of amplicon sequence variants
- Order: Biological taxonomy in order level of amplicon sequence variants
- Family: Biological taxonomy in family level of amplicon sequence variants
- Genus: Biological taxonomy in genus level of amplicon sequence variants
Plantspeciesidentifications
- Treatment: Warming or Non-warming
- Ecosystem type: The experimental ecosystem type
- Species name: Plant species name in experimental plot
- Relative height: Relative plant height in experimental plot
- Relative density: Relative plant density in experimental plot
- Relative coverage: Relative plant coverage in experimental plot
- Relative aboveground biomass: Relative plant aboveground biomass in experimental plot
