Shifting speciation mode and biogeographic patterns during the Late Ordovician (Sandbian-Katian) in Laurentian brachiopods (Atrypida, Anazygidae)
Data files
Jun 24, 2025 version files 51.53 KB
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Anazygidae_geoareas.data
621 B
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Anazygidae_tree.tre
893 B
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b_AICc_table.csv
442 B
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BioGeoBEARS_code.R
47.80 KB
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README.md
1.77 KB
Abstract
The Late Ordovician was a period of substantial environmental change. The co-evolution of Earth systems changes involving tectonic uplift, eustasy, and biotic changes are recorded in the Late Ordovician in Laurentia. In this study, species of the brachiopod family Anazygidae within the genera Zygospira and Catazyga were analyzed to assess dispersal pathways among eight sedimentary basins. Stochastic analysis applied to a Bayesian phylogeny (Anazygidae_tree.tre) through BioGeoBEARS facilitated estimation of speciation events including episodes of vicariance and basin-to-basin dispersal events (Anazygidae_geoareas.data) within the clade. Three algorithms were implemented and compared (BioGeoBEARS_code.R). Dispersal-extinction-cladogenesis (DEC) + jump dispersal parameter was the best supported model. For suggestions, advice, or requests related to the code and how to re-run our results, please contact the author.
Results (b_AICc_table.csv) indicate that Anazygidae originated from an ancestral vicariance event, and most subsequent speciation events occurred via dispersal (total of 14 distinct episodes). Vicariance events are constrained to Mohawkian (Sandbian 2 to Katian 1) time and correlate to tectonic events. Dispersal events dominated during Cincinnatian (Katian 1–4) time and promoted increased diversification of anazygid species. Dispersal events are related to epicontinental circulation patterns and regional sea level changes and can be linked to connectivity and isolation pulses between the mid-continent and southern basins. Dispersal events exhibit a directional trend from the mid-continent toward the southern-most basins in Laurentia. Long-distance dispersal can be explained by jump dispersal events, with marginal-Laurentian islands acting as “stepping-stones” for intracratonic species. Anazygid speciation declined in the Richmondian (Katian 4). Zygospira and Catazyga became extinct in Laurentia as the epicontinental seas drained and climate cooled during the late Katian.
Dataset DOI: 10.5061/dryad.d51c5b0fs
Description of the data and file structure
Files and variables
File: BioGeoBEARS_code.R
Description: R code used in R 4.3.0 with original (Matzke, 2013) and adapted comments
File: Anazygidae_geoareas.data
Description: Anazygidae_geoareas.data is the file used in the R script. It's a .txt file saved as .data.
The first line contains the number of analyzed taxa (20), the number of total geographic areas (8), and the initial letters for each studied geographic area. Presence/absence of the taxa in a given geographic area is given by 0 (absence) or 1 (presence).
O = Scoto-Avalonia; W= Western Mid-Continent; U= Upper Mississippi Valley; E= Eastern Canada; F= Proximal Foreland basin; N= Northern Appalachian Basin; S= Southern Appalachian Basin; and A= Alaska.
More details on the geographic distribution, and which states/provinces these areas refer to are mentioned in the manuscript.
File: Anazygidae_tree.tre
Description: It's the analyzed .tre file from Vilela-Andrade et al. (2025)
File: b_AICc_table.csv
Description: The .csv file is the exported results from the R code. The column "Model" refers to all tested models + J parameters; "LnL" refers to the logarithmic likelihood; "d" refers to the dispersal rates along each branch; "e" refers to the extinction rates along each branch; "j" stands for jump dispersal (see original text); AICc refers to the corrected Akaike Information Criterion (see Matzke, 2013); and AICc_wt refers to the weighted Akaike Information Criterion.
