Dominant deer mice show the importance of abundance in competition
Data files
Dec 16, 2025 version files 31.65 KB
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README.md
1.82 KB
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Trait_data.xlsx
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Abstract
Detecting competitive interactions is important for predicting species responses to environmental change, but it remains challenging, especially over large scales. Based on classical coexistence theory, competition should be most important between species with similar ecological traits (i.e., diet, habitat). However, species with life-history traits that allow them to be very prolific can have competitive effects even with subtle ecological overlap. Such species may be able to achieve such high abundances that they dominate all other competitors (i.e., “dominant entities”). We tested for competition and the importance of dominant entities in small mammal communities (n = 68 species) at 44 sites in 18 regions across the United States using the US National Ecological Observatory Network (NEON). We based inference on changes in abundance over time while also accounting for weather and habitat factors using a dynamic generalized joint attribute modeling framework. We compared relative interaction strengths inferred from our model to predictions expected under coexistence theory based on ecological and life history traits. We used three different cutoff levels to classify a species (or set of species) as dominant entities: >= 45 % of the total interaction strength, > 50 % of the total abundance at a site and a relatively large number of strong interactions (> 10 % of total interaction strength at the site). Predictions of competition based on coexistence theory were not well supported by model results (mean = 0.25, SE = 0.03). Our model indicated more sites with dominant entities than predicted by coexistence theory. In particular, our model identified three generalist Peromyscus species as the dominant entities at more sites (53.1 % vs. 0 %), associated with higher mean interaction strength at a site (58.0 % [SE = 7.5 %] vs 13.8 % [SE = 1.4 %]) and a higher proportion of strong interactions with other species at a site (46.2 % [SE = 4.4 %] vs. 26.7 % [SE = 1.7 %]). Model results more closely matched large-scale observed abundance patterns than did theory-based predictions, suggesting that accounting for dominant entities is important for characterizing competitive interactions. Our study shows the potential of using changes in abundance over time to make inference on community change while accounting for competitive interactions, where reliance on presence/absence and/or ecological traits alone could miss important dynamics.
Dataset DOI: 10.5061/dryad.dbrv15fdg
Description of the data and file structure
Ecological traits included in our analysis from the COMBINE mammal trait database (Soria et al. 2021) and were: fossoriality, arboreality, diet (i.e., the proportion of the diet made up of invertebrates, vertebrates, fruit, nectar, seeds and plants, respectively [note: per = percentage]), diet breadth (i.e., the number of different diet categories that constitute ≥ 20 % of a species’ diet; Soria et al. 2021), habitat breadth (i.e., the number of distinct level 1 IUCN habitats suitable for the species; Soria et al. 2021), trophic level and activity cycle (Soria et al. 2021). For life history traits, we used the mean adult mass (g), mean litter size, and number of litters per year for each species, the age at first reproduction, and maximum longevity from the COMBINE mammal trait database (Soria et al. 2021). We used mean survival estimates from (Cayuela et al. 2024) for species for which estimates were available. For species lacking annual survival estimates, we averaged mean survival estimates over other members of the genus where available. Where genus-level estimates were unavailable, we used estimates from the literature. For yes/no variables, 1 = yes, 2 = no.
Files and variables
File = Trait_data.xlsx
Tab1 = Life history traits
Tab2 =Ecological traits
Access information
Other publicly accessible locations of the data:
- N/A
Data was derived from the following sources:
- Soria, C. D., M. Pacifici, M. Di Marco, S. M. Stephen, and C. Rondinini. 2021. COMBINE: a coalesced mammal database of intrinsic and extrinsic traits. Ecology 102:e03344.
- Cayuela, H. et al. 2024. Global patterns and drivers of amphibian survival. Nature. In Review.
