Data from: Efficient induction of motor neuron disease in transgenic G93A SOD1 mice by prion-like seeding
Data files
Apr 15, 2026 version files 84.44 GB
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Figure_1A-D_(YFP).zip
86.08 MB
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Figure_1B’-D’_(silver_staining).zip
18.86 GB
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Figure_2_and_3_(silver_staining).zip
41.62 GB
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Figure_4_(UBi-1_staining).zip
23.87 GB
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README.md
5.96 KB
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Xu_et_al_mouse_list.xlsx
28.13 KB
Abstract
Mutations in superoxide dismutase 1 (SOD1) cause paralysis in familial amyotrophic lateral sclerosis and promote its misfolding into neurotoxic aggregates. Previous studies have shown that mice expressing the ALS-causing G85R variant of SOD1 develop paralysis much faster after intraspinal injection of spinal homogenates from paralyzed G85R SOD1 mice. These findings, and other studies in cell models, established the prionoid templating properties of misfolded mutant SOD1. Previously, however, we noted that the widely used Gur1-G93A SOD1 mice, which express at high levels and develop paralysis by 6 months of age, were resistant to seeding by homogenates from paralyzed G93A mice. A line of G93A mice that express at very low levels (VLE-G93A) were responsive to seeding but at low efficiency. The poor susceptibility of G93A-SOD1 mice to seeding was not what we expected if prion-like propagation is essential to SOD1 ALS pathogenesis. In our prior, studies seeding homogenates from paralyzed G93A-SOD1 mice were injected into the spine of newborn mice, leading us to question whether older G93A SOD1 mice might be more susceptible to seeding. Here, we establish that adult VLE G93A SOD1 mice (up to 12 months of age) injected intrathecally with seeding homogenates containing misfolded G93A or G85R SOD1 developed accelerated motor neuron disease efficiently. Thus, we demonstrate that both the route and age of inoculation can influence the efficiency of SOD1 seeding to induce motor neuron disease in VLE G93A-SOD1 mice. These data, together with our earlier reports, suggest that prion-like templating contributes to disease progression in SOD1-ALS.
This repository contains animal metadata and histological image data used in the study.
All files are organized to ensure clear traceability between animals, experimental conditions referenced in the manuscript, and figure panels, while supporting efficient data access, sharing, and repository submission.
Animal Metadata
The image files are documentation of pathologic features in mice that develop paralysis as a result of the injection of tissue homogenates from paralyzed mice. All animals used in this study are documented an Excel file:
- Xu_et_al_mouse_list.xlsx
This Excel file contains 11 tabs, each corresponding to animals contributing to a specific figure in the manuscript. The Tab names refer to the animals used in generating each figure in publication and the tissue homogenate used to induce early paralysis, listed below. The animals used in Figures 3 and 4 are the same as those used in Figure 2; tissue sections have been stained by different methods.
Figure 1A-D (YFP), Figure 1B’-D’ (silver staining): Tab names
· Fig1 P0 ISP Y230
· Fig1 P0 ISP 230 pool
· Fig 1 Int-230 pool @2mo
Figure 2, Figure 3 (silver staining), Figure 4 (Ubi-1 staining): Tab names
· Fig 2A Uninjected
· Fig 2B G93A 12mo
· Fig 2B P2-G93A 12mo
· Fig 2B P2-G93A P0
· Fig 2B P2-G93A 2mo
· Fig 2B P2-G93A 6mo
· Fig 2B 230 pool 12mo
· Fig 2B Y230 12mo
Description of column names within each tab.
MouseID - Each animal receives a mouse cage ID (assigned by the University of Florida Animal Care Services) and tail tattoo number (1-5 per cage). Together these numbers create a mouse identification number ().
Sex of the animal is indicated.
Age indicates the cumulative age at the time of euthanasia.
Symptoms - notes on clinical evaluation at time of euthanasia
Incubation- notes the the incubation period (interval between injection of homogenates and appearance of paralysis) in months (mo).
The relative severity of pathologic abnormalities in spinal cord is noted by +, ++, or +++ rating for each of the following.
YFP aggregates refers to direct fluorescence of pathologic inclusions produced by mutant superoxide dismutase 1 fused to yellow fluorescent protein (YFP).
Silver staining refers to tissues stained by the Campbell-Switzer method of silver staining to secondarily confirm pathology.
Ubi-1 refers tissues stained by antibodies to ubiquitin to reveal pathology in mice that express mutant superoxide dismutase 1 lacking the YFP tag.
n.d. indicates not done
Notes - indicates which images were used in specific Figures in the accompanying publication.
File Overview
Image Data Packaging Strategy
All image data related to this study are stored in four main folders mainly according to the figure number. Each folder is further subdivided according to the experimental groups referenced in the figure panels. The data were compressed into four primary ZIP archives. Each ZIP archive corresponds to a figure (or group of figures) in the manuscript and contains subfolders organized by figure panel, experimental group, and time point.
· YFP images were captured using a fluorescence microscope and are saved in .tiff format.
· Silver-stained and Ubi-1 immunostained slides were scanned using the Aperio digital slide scanning system. These images are saved in .svs format and can be viewed using ScanScope (free software https://www.leicabiosystems.com/us/digital-pathology/manage/aperio-imagescope/).
Zipped Image Archives
- Figure_1A-D_(YFP).zip
YFP fluorescence microscopy images corresponding to Figure 1A–D. - Figure_1B’-D’_(silver_staining).zip
Silver-stained images corresponding to Figure 1B′–D′. - Figure_2_and_3_(silver_staining).zip
Silver-stained images corresponding to Figures 2 and 3. - Figure_4_(UBi-1_staining).zip
Ubi-1 immunostained images corresponding to Figure 4.
Directory Structure Inside ZIP Archives
Each ZIP archive preserves a consistent internal directory structure.
The folders listed below represent subdirectories contained within the corresponding ZIP files and map directly to figure panels in the manuscript.
Figure 1A–D (YFP)
Fig 1 Int-230 pool @2moFig1 P0 ISP 230 poolFig1 P0 ISP Y230 control
Figure 1B′–D′ (Silver Staining)
Fig 1 Int-230 pool @2mo silverFig 1 P0 ISP 230 pool silverFig 1 P0 ISP Y230 control silver
Figures 2 and 3 (Silver Staining)
Figure (2A, 3A) G93A UninjectedFigure (2B-1, 3D) G93A G93A@12moFigure (2B-2, 3E) P2-G93A pool@12moFigure (2B-3, 3G) P2-G93A pool@0moFigure (2B-4, 3H) P2-G93A pool@2moFigure (2B-5, 3I) P2-G93A pool@6moFigure (2B-6, 3C) G93A 230 pool@12moFigure (2B-7, 3B) G93A Y230 pool@12moFigure (3F) G93A G93A@0mo
Figure 4 (Ubi-1 Staining)
Figure 4A G93A Uninjected (Ubi-1)Figure 4B G93A Y230 pool@12mo (Ubi-1)Figure 4C G93A 230 pool@12mo (Ubi-1)Figure 4D G93A G93A@12mo (Ubi-1)Figure 4E P2-G93A pool@12mo (Ubi-1)Figure 4F G93A G93A@0mo (Ubi-1)Figure 4G P2-G93A pool@0mo (Ubi-1)Figure 4H P2-G93A pool@2mo (Ubi-1)Figure 4I P2-G93A pool@6mo (Ubi-1)
Study Design
The primary goal of the study was to determine whether older VLE G93A-SOD1 mice may be more susceptible to prion-like seeding by intrathecal administration of seeding homogenates. We injected VLE G93A mice with homogenates from paralyzed G93A SOD1 mice or pooled homogenates from paralyzed mice expressing G85R-SOD1 fused to yellow fluorescent protein (YFP) that had been made paralyzed by injection of homogenates from paralyzed G93A SOD1 mice (designated P2-G93A seeding pool). Initially, we challenged 12-month-old mice with both seeding homogenates and then subsequently determined whether younger VLE G93A-SOD1 mice were also susceptible, using the P2-G93A pool. Controls for these experiments included uninjected VLE G93A-SOD1 mice and mice injected with a pooled homogenate from young asymptomatic naïve 2-month-old Line 230 mice (Y230 pool). Pathological analyses of these animals produced image data for Figures 2 - 4 of the accompanying publication.
In prelude to the G93A mouse study, we first sought to compare the relative seeding efficacy of different injection routes using a highly permissive line of homozygous mice expressing G85R-SOD1:YFP (Line 230 model). The seeding-homogenates for these studies were either the control Y230-pool or a pool of homogenates from seeded paralyzed G85R-SOD1:YFP mice. We compared the incubation time to paralysis following lumbar intraspinal (ISP) injection in P0 newborn mice to lumbar intrathecal injection in 2 month old Line 230 mice. Pathological analyses of these animals produced image data for Figure 1 of the accompanying publication.
For most of these injections, we sought to inject mice from 2 to 3 litters. The homozygous 230 mice naturally produced larger cohorts. In the VLE G93A study, each cohort receiving the G93A or P2-G93A pool was between 8 and 10 transgene positive animals. Only one litter of VLE G93A mice was injected with the 230 pool and Y230 pool inoculum, producing smaller cohorts of transgene positive animals.
The primary humane endpoint for all injections was overt paralysis of at least one hindlimb. In a subset of mice, other body condition factors such as hydration or muscle atrophy were considered in decisions to euthanize and harvest tissues from mice that were obviously weak but not yet paralyzed. Laboratory staff were not blind to treatment or genotype, but veterinary staff that assisted in determining endpoint were blind. Mice that were recommended for euthanasia due to fighting wounds or tumor development were excluded from the study. No mice that received seeding injections for data in Figure 1 were excluded from the study. For the data in Figure 2, there were mice that had to be excluded post-injection; Group 1 – 2 mice and Group 3 – 1 mouse.
Mice that were identified as distressed and recommended for euthanasia but did not otherwise exhibit signs of paralysis were excluded from statistical analyses of incubation periods. For data in Figure 2B there were the following exclusions: Group 1 – 1 animal, Group 2 – 2 animals, Group 3 – 1 animal, Group 5 – 2 animals, Group 7 – 3 animals.
Neuropathology
Detailed methods for tissue collection and neuropathology are described in Ayers et al 23. For imaging YFP fluorescence, paraffin-embedded tissues were cut at 5 μm thickness and then deparaffinized and mounted on coverslips with water; images were visualized by epifluorescence Olympus BX60 microscope. After imaging, the coverslips were removed, and the slides were stained by Campbell-Switzer silver stain as previously described 23,34. Ubiquitin staining was performed as described previously 39. Paraffin sections were deparaffinized, steamed in citrate buffer (10 mM citrate, pH 6.0, with 0.05% Tween-20) for 20 minutes. After rinsing the slides with tap water, the slides were blocked with 3% normal goat serum in PBS containing Tween 20, and then incubated overnight with ubiquitin antibody (mouse monoclonal MCA-Ubi-1, 1:1000; Encor Biotechnology, Gainesville, FL). After quenching with 0.03% hydrogen peroxide in PBS-T, sections were treated with a biotinylated anti-mouse secondary antibody (1:500; Vector Laboratories, Newark, CA), followed by ABC-HRP and DAB (KPL, Seracare, MD) detection. Slides were counterstained with hematoxylin. Images were acquired at 20× using an Aperio ScanScope XT (Leica Biosystems), processed in ImageScope, and edited in GIMP ((GNU Image Manipulation Program v3.0.4: gimp.org) for cropping and scale bar addition based on pixel calibration.
