Modelled past autumn leaf phenology of deciduous trees
Data files
Dec 21, 2023 version files 1.32 GB
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CalibratedParametersSiteSpecificModel.Rds
420.16 MB
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CalibratedParametersSpeciesSpecificModel.Rds
4.99 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_CMAESextd.Rds
37.09 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_CMAESnorm.Rds
36.62 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_EGOextd.Rds
30.14 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_EGOnorm.Rds
34.16 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_GenSAextd.Rds
27.21 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_GenSAnorm.Rds
28.87 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_PSOextd.Rds
34.22 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_PSOnorm.Rds
31.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_TREGOextd.Rds
30.55 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_TREGOnorm.Rds
34.50 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_CMAESextd.Rds
21.33 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_CMAESnorm.Rds
23.54 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_EGOextd.Rds
19.43 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_EGOnorm.Rds
22.25 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_GenSAextd.Rds
17.47 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_GenSAnorm.Rds
17.93 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_PSOextd.Rds
22.43 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_PSOnorm.Rds
22.65 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_TREGOextd.Rds
19.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_TREGOnorm.Rds
22.55 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_CMAESextd.Rds
36.53 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_CMAESnorm.Rds
36.56 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_EGOextd.Rds
29.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_EGOnorm.Rds
33.80 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_GenSAextd.Rds
29.09 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_GenSAnorm.Rds
27.91 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_PSOextd.Rds
33.13 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_PSOnorm.Rds
32.82 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_TREGOextd.Rds
30.14 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_TREGOnorm.Rds
34.15 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_CMAESextd.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_CMAESnorm.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_EGOextd.Rds
1.27 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_EGOnorm.Rds
1.55 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_GenSAextd.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_GenSAnorm.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_PSOextd.Rds
1.47 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_PSOnorm.Rds
1.50 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_TREGOextd.Rds
1.27 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_TREGOnorm.Rds
1.56 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_CMAESextd.Rds
823.23 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_CMAESnorm.Rds
825.78 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_EGOextd.Rds
688.12 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_EGOnorm.Rds
846.59 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_GenSAextd.Rds
822.17 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_GenSAnorm.Rds
823.86 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_PSOextd.Rds
815.30 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_PSOnorm.Rds
807.61 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_TREGOextd.Rds
695.96 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_TREGOnorm.Rds
853.01 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_CMAESextd.Rds
1.45 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_CMAESnorm.Rds
1.45 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_EGOextd.Rds
1.20 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_EGOnorm.Rds
1.47 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_GenSAextd.Rds
1.43 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_GenSAnorm.Rds
1.44 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_PSOextd.Rds
1.38 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_PSOnorm.Rds
1.43 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_TREGOextd.Rds
1.21 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_TREGOnorm.Rds
1.48 MB
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README_test.md
5.17 KB
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README.md
8.77 KB
Dec 21, 2023 version files 1.32 GB
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CalibratedParametersSiteSpecificModel.Rds
420.16 MB
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CalibratedParametersSpeciesSpecificModel.Rds
4.99 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_CMAESextd.Rds
37.09 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_CMAESnorm.Rds
36.62 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_EGOextd.Rds
30.14 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_EGOnorm.Rds
34.16 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_GenSAextd.Rds
27.21 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_GenSAnorm.Rds
28.87 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_PSOextd.Rds
34.22 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_PSOnorm.Rds
31.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_TREGOextd.Rds
30.55 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Beech_TREGOnorm.Rds
34.50 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_CMAESextd.Rds
21.33 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_CMAESnorm.Rds
23.54 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_EGOextd.Rds
19.43 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_EGOnorm.Rds
22.25 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_GenSAextd.Rds
17.47 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_GenSAnorm.Rds
17.93 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_PSOextd.Rds
22.43 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_PSOnorm.Rds
22.65 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_TREGOextd.Rds
19.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Larch_TREGOnorm.Rds
22.55 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_CMAESextd.Rds
36.53 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_CMAESnorm.Rds
36.56 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_EGOextd.Rds
29.73 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_EGOnorm.Rds
33.80 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_GenSAextd.Rds
29.09 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_GenSAnorm.Rds
27.91 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_PSOextd.Rds
33.13 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_PSOnorm.Rds
32.82 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_TREGOextd.Rds
30.14 MB
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ObservedAndModelledAutumnPhenologySiteSpecificModel_Oak_TREGOnorm.Rds
34.15 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_CMAESextd.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_CMAESnorm.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_EGOextd.Rds
1.27 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_EGOnorm.Rds
1.55 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_GenSAextd.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_GenSAnorm.Rds
1.52 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_PSOextd.Rds
1.47 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_PSOnorm.Rds
1.50 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_TREGOextd.Rds
1.27 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Beech_TREGOnorm.Rds
1.56 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_CMAESextd.Rds
823.23 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_CMAESnorm.Rds
825.78 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_EGOextd.Rds
688.12 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_EGOnorm.Rds
846.59 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_GenSAextd.Rds
822.17 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_GenSAnorm.Rds
823.86 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_PSOextd.Rds
815.30 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_PSOnorm.Rds
807.61 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_TREGOextd.Rds
695.96 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Larch_TREGOnorm.Rds
853.01 KB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_CMAESextd.Rds
1.45 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_CMAESnorm.Rds
1.45 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_EGOextd.Rds
1.20 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_EGOnorm.Rds
1.47 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_GenSAextd.Rds
1.43 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_GenSAnorm.Rds
1.44 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_PSOextd.Rds
1.38 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_PSOnorm.Rds
1.43 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_TREGOextd.Rds
1.21 MB
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ObservedAndModelledAutumnPhenologySpeciesSpecificModel_Oak_TREGOnorm.Rds
1.48 MB
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README_test.md
5.17 KB
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README.md
8.91 KB
Abstract
Autumn leaf phenology (i.e. leaf colouring or leaf senescence) marks the end of the growing season, during which trees assimilate atmospheric CO2. Since autumn leaf phenology responds to climatic conditions, climate change affects the length of the growing season. Thus, autumn phenology is often modelled to assess possible climate change effects on future CO2 mitigating capacities and species compositions of forests.
Here, we give access to the entire dataset of modelled autumn phenology analyzed in Meier and Bigler (2023). The data was derived from >2.3 million model calibration runs according to 21 such models, 5 optimization algorithms, ≥7 sampling procedures, and 26 climate model chains from two representative concentration pathways. Calibration and validation were based on >45 000 observations for common beech (Fagus sylvatica L.), pedunculate oak (Quercus robur L.), and European larch (Larix decidua Mill.) from 500 Central European sites each.
Cite as Meier, M., & Bigler, C. (2023). Process-oriented models of autumn leaf phenology: Ways to sound calibration and implications of uncertain projections. Geoscientific Model Development, 16(23), 7171–7201. https://doi.org/10.5194/gmd-16-7171-2023
Autumn leaf phenology was modelled with different process-oriented models that were calibrated as either site- or species-specific models. The calibrations differed in the choice of optimization algorithms and choice of sampling procedures to separate observations for the 5-fold cross-validation in site-specific calibration or to select the sites in species-specific calibration. Species-specific models were calibrated with 75% of the observations of the selected sites and validated with (the remaining) 25% of the observations of all 500 sites per species.
For more detailed information consult the original publication Meier and Bigler (2023).
Please cite as
Meier, M., & Bigler, C. (2023). Process-oriented models of autumn leaf phenology: Ways to sound calibration and implications of uncertain projections. Geoscientific Model Development, 16(23), 7171–7201. https://doi.org/10.5194/gmd-16-7171-2023
Description of the Data and file structure
The Rds files can be opened in the software R (R Core Team, 2022) with the base function readRDS().
Calibrated sets of model parameters
There is one file per site- or species-specific models. The data are...
| Column name | Description |
|---|---|
| Site | The ID of the site of the observation, which corresponds to the PEP_ID of the PEP725 dataset. |
| Species | The species to which the data corresponds (i.e. one of beech, oak, or larch). |
| Model | The process-oriented model for autumn phenology that generated the modelled data. |
| Type | The process-oriented model for autumn phenology that generated the modelled data. |
| Algorithm | Which optimization algorithm was used to calibrate the model? (EGO, TREGO, GenSA, PSO, or CMA-ES executed in normal, norm., or extensive, extd., mode). |
| SamplingProcedure | The procedure according to which observations or sites were selected for the site- or species-specific calibration, respectively. |
| NoOfSites** | The number of sites included in the calibration sample for the species-specific calibration. |
| SubDraw** | The draw of the sample, as each sample for species-specific calibration was drawn five times, except for the full sample. |
| CV_fold* | The ith fold of the 5-fold cross-validation used in site-specific calibration (NA for the calibration with all observations that was used for the projections). |
| OptimizationDuration | The duration of the calibration run. |
| Parameter1 | The 1st calibrated parameter (Meier M., 2022). |
| Parameter2 | The 2nd calibrated parameter (Meier M., 2022). |
| Parameter3 | The 3rd calibrated parameter (Meier M., 2022). |
| Parameter4 | The 4th calibrated parameter (Meier M., 2022). |
| Parameter5 | The 5th calibrated parameter (Meier M., 2022). |
| Parameter6 | The 6th calibrated parameter (Meier M., 2022). |
| Parameter7 | The 7th calibrated parameter (Meier M., 2022). |
*) Applies only to site-specific models.
**) Applies only to species-specific models.
Modelled dates of autumn phenology
There is one file per combination of site- or species-specific calibration, species, and optimization algorithm. The data are...
| Column name | Description |
|---|---|
| DOY_observed | The observed day of year of autumn phenology, derived from the PEP725 database [day of year]. |
| DOY_modelled | The modelled day of year [day of year]. |
| Year | The year of the observation [year]. |
| Site | The ID of the site of the observation, which corresponds to the PEP_ID of the PEP725 dataset. |
| Species | The species to which the data corresponds (i.e. one of beech, oak, or larch). |
| Model | The process-oriented model for autumn phenology that generated the modelled data. |
| Type | Was the data modelled with a site- or species-specific model? |
| Algorithm | Which optimization algorithm was used to calibrate the model? (EGO, TREGO, GenSA, PSO, or CMA-ES executed in normal, norm., or extensive, extd., mode). |
| SamplingProcedure | The procedure according to which observations or sites were selected for the site- or species-specific calibration, respectively. |
| NoOfSites** | The number of sites included in the calibration sample for the species-specific calibration. |
| SubDraw** | The draw of the sample, as each sample for species-specific calibration was drawn five times, except for the full sample. |
| CV_fold* | The ith fold of the 5-fold cross-validation used in site-specific calibration (NA for the calibration with all observations that was used for the projections). |
| ModelMode | Was the data modelled during the calibration or validation of the model? |
| SiteOfCalibration** | Was this site also used in the calibration of the species-specific model? (TRUE or FALSE) |
| RunConverged | Did the calibration or validation run converge? (TRUE or FALSE) |
*) Applies only to site-specific models.
**) Applies only to species-specific models.
Sharing/access Information
The observed autumn leaf phenology data was downloaded from the PEP725 database on April 13, 2022 (http://www.pep725.eu/).
Reference
Meier, M. (2022). Process-oriented models of autumn leaf phenology (1.0). Zenodo. https://doi.org/10.5281/zenodo.7188160
R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing. https://www.r-project.org/
Autumn leaf phenology was modelled with different process-oriented models that were calibrated as either site- or species-specific models. The calibrations differed in the choice of optimization algorithms and choice of sampling procedures to separate observations for the 5-fold cross-validation in site-specific calibration or to select the sites in species-specific calibration. Species-specific models were calibrated with 75% of the observations of the selected sites and validated with (the remaining) 25% of the observations of all 500 sites per species.
The data contains files of calibrated parameter sets and files of modelled dates of autumn leaf phenology.
The observed autumn leaf phenology data was downloaded from the PEP725 database on April 13, 2022 (http://www.pep725.eu/).
For more detailed information consult the original publication Meier and Bigler (2023) for which full reference is given in the abstract to this dataset.
The Rds files can be opened in the software R (R Core Team, 2022) with the base function readRDS().
- Meier, Michael; Bigler, Christof (2023), Process-oriented models of autumn leaf phenology: ways to sound calibration and implications of uncertain projections, Geoscientific Model Development, Journal-article, https://doi.org/10.5194/gmd-16-7171-2023
