Data from: Analysis of genomic data leads to an improved understanding of the phylogeny and biogeography of yellow bats
Data files
Feb 04, 2026 version files 873.80 MB
-
Ega.nex
174.09 MB
-
Full_Lasiurus.nex
52.98 MB
-
Intermedius_Ega.nex
346.24 MB
-
Intermedius.nex
233.35 MB
-
README.md
2.61 KB
-
Subsampled_forBEAST.nex
25.41 MB
-
Subsampled_Lasiurus.nex
24.92 MB
-
Xanthinus.nex
16.82 MB
Abstract
Genomic dataset associated with the Decker et al. manuscript titled "Analysis of genomic data leads to an improved understanding of the phylogeny and biogeography of yellow bats". We provide multiple fully assembled and filtered datasets that were used for various phylogenetic and population genetic analyses. The data represent reduced representation genomic data collected using genotyping-by-sequencing methods with the restriction enzyme PstI. The GBS libraries were sequenced at the Ohio State University Comprehensive Cancer Center Shared Genomics Research laboratory as eith 100bp single-end or 150bp-paired end reads on an Illumina NextSeq 2000. Reads were trimmed with Trimmomatic and processed using the iPyrad pipeline. Our datasets contain multiple species of yellow bats or separate assemblies for each species. Metadata for each dataset is available.
Dataset DOI: 10.5061/dryad.ffbg79d6g
Description of the data and file structure
We provide multiple fully assembled and filtered datasets that were used for various phylogenetic and population genetic analyses. The data represent reduced representation genomic data collected using genotyping-by-sequencing methods with the restriction enzyme PstI. The GBS libraries were sequenced at the Ohio State University Comprehensive Cancer Center Shared Genomics Research laboratory as eith 100bp single-end or 150bp-paired end reads on an Illumina NextSeq 2000. Reads were trimmed with Trimmomatic and processed using the iPyrad pipeline. Our datasets contain multiple species of yellow bats or separate assemblies for each species. Metadata for each dataset is available in the SD2 of the journal publication.
Samples are named based on collection code, collection specimen catalog number, abbreviated species name, and locality. For example: OSUM-M11202-Lbor-Ohio
An L. borealis collected in Ohio is held by the Ohio State University Museum of Biological Diversity (OSUM) and is assigned the catalog number: OSUM-M11202.
Files and variables
File: Full_Lasiurus.nex
Description: Nexus file for the Full Lasiurus dataset used for IQTree and HyDe analysis. Contains 3494 loci for 125 specimens of Lasiurus ega, L. xanthinus, L. intermedius, L. insularis, L. borealis, and L. cinereus.
File: Ega. nex
Description: Nexus file for 44 Lasiurus ega used for ADMIXTURE analysis. Contains 33422 loci.
File: Intermedius.nex
Description: Nexus file for 40 Lasiurus intermedius used for ADMIXTURE analysis. Contains 49286 loci.
File: Xanthinus.nex
Description: Nexus file for 33 Lasiurus xanthinus used for ADMIXTURE analysis. Contains 3545 loci.
File: Subsampled_forBEAST.nex
Description: Nexus file for 70 specimens of Lasiurus ega, L. xanthinus, L. intermedius, L. insularis, L. borealis, and L. cinereus. Contains 2964 loci used for BEAST divergence time estimation.
File: Subsampled_Lasiurus.nex
Description: Nexus file for 71 specimens of Lasiurus ega, L. intermedius, L. xanthinus, L. insularis, and L. borealis. Contains 2902 loci used for tree estimation with SVDQuartets.
File: Intermedius_Ega.nex
Description: Nexus file for 84 specimens of Lasiurus intermedius and L. ega used for ADMIXTURE analysis. Contains 35090 loci.
