Data from: A leaf-surface fungus mediates interactions between leafcutter bees and the plants they cut to line their nests
Data files
Sep 03, 2025 version files 8.20 MB
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full_microbial_communities_hilic.csv
44.97 KB
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full_microbial_communities_rp.csv
40.45 KB
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hilic_all_leaflets_aspergillus.csv
1.84 MB
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inoculation_experiment.csv
2.79 KB
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pathogen_inhibition.csv
1.93 KB
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README.md
7.30 KB
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rose_phylloplane_communities.csv
217.22 KB
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rp_all_leaflets_aspergillus.csv
6.03 MB
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rp_compounds_table.xlsx
15.54 KB
Abstract
Many arthropods damage leaves, a phenomenon that is foundational to their impacts on terrestrial ecosystems. Leaf traits, including chemistry, shape these interactions. In turn, leaf-surface (phylloplane) microbes can act directly or in concert with chemistry to influence leaf choice, especially by insects whose reproductive success is tied to prolonged contact with leaf surfaces. Leafcutter bees (Megachile spp.) cut discs from leaves to line their nests, with leaves and their associated microbes forming the environment in which bees’ offspring develop. We predicted that phylloplane microbial communities act in concert with leaf chemistry to mediate interactions between the leafcutter bee M. lippiae and the plants they cut. We surveyed phylloplane communities on rose (Rosa × hybrida, Rosaceae) leaflets that were cut vs. not cut by wild M. lippiae. Then, we inoculated rose leaves in the field to test the effect of abundant microbes on cutting. Microbial communities differed between cut and non-cut leaflets. In particular, Aspergillus spp. were over-represented on cut leaflets, and Alternaria sp. and Bacillus sp. were over-represented on non-cut leaflets. When inoculated onto rose leaves, Alternaria and Bacillus did not affect cutting, but Aspergillus resulted in twice as many cuts as sham-inoculated leaves. To test whether Aspergillus could protect bee nests against pathogens, we grew Aspergillus with two pathogenic fungi: the generalist insect pathogen Beauveria bassiania, and three strains of Ascosphaera that cause chalkbrood disease in bee larvae. Aspergillus did not inhibit the growth of Beauveria, but it markedly slowed the growth of Ascophera. To clarify whether these phylloplane microbes reflect differences in leaf chemistry or are instead independent cues that influence leaf cutting, we used liquid chromatography-mass spectroscopy to characterize the metabolome of cut and non-cut leaflets. Chemistry did not differ between cut and non-cut leaflets, nor was it related to microbial community composition. Our results suggest that Aspergillus, a common member of rose phylloplane communities, mediates interactions between leafcutter bees and roses, potentially affecting the fitness of both partners. This study reveals a previously unexplored microbial dimension to plant-insect associations.
https://doi.org/10.5061/dryad.jwstqjqk5
Description of the data and file structure
These files contain data on the phylloplane microbial communities and metabolomes of rose leaflets. We collected these data to understand how the leaf microbiome and chemistry affect cutting by leafcutter bees.
Files and variables
File: rp_compounds_table.xlsx
Description: Contains a list of compounds identified in metabolomics analyses along with chromatographic and spectral data. Intended as a supplementary table, not a raw data file.
File: full_microbial_communities_hilic.csv
Description: Contains metabolomic data collected through hydrophobic interaction liquid chromatography, plus morphotype-based phylloplane microbial community data, for 20 rose leaflets.
Variables
- ind: identifier for the rose individual. Letter(s) indicate cultivar: I="Impatient", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", UB/UT=unlabeled
- cutstatus: whether a leaf was cut by a leafcutter bee or not
- leaftreat: W=washed with sterile water, NW=not washed.
- prop.asp.Nigri: proportion of CFU from the leaf that were fungi belonging to the Aspergillus sect. Nigri
- asp.nigri: presence/absence of Aspergillus sect. Nigri
- delta.Gluconic acid.delta.lactone.x and similar: these and the following columns are normalized area under curve values for a given feature. Features that could not be confidently identified have been given alphanumeric names (e.g., us100)
- M_200 and similar: unique microbial morphotype identifiers
- M_200.rel and similar: relative abundance of morphotypes
File: full_microbial_communities_rp.csv
Description: Contains metabolomic data collected through reversed-phase liquid chromatography, plus morphotype-based phylloplane microbial community data, for 20 rose leaflets.
Variables
- ind: identifier for the rose individual. Letter(s) indicate cultivar: I="Impatient", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", UB/UT=unlabeled
- cutstatus: whether a leaf was cut by a leafcutter bee or not
- leaftreat: W=washed with sterile water, NW=not washed.
- prop.asp.Nigri: proportion of CFU from the leaf that were fungi belonging to the Aspergillus sect. Nigri
- asp.nigri: number of CFU from the leaf that were fungi belonging to the Aspergillus sect. Nigri
- delta.Gluconic acid.delta.lactone.x and similar: these and the following columns are normalized area under curve values for a given compound. Compounds that could not be confidently identified have been given alphanumeric names (e.g., us100)
- M_200 and similar: unique microbial morphotype identifiers
- M_200.rel and similar: relative abundance of morphotypes
File: inoculation_experiment.csv
Description: Results of the rose leaf inoculation experiment
Variables
- plot: identifier for a section of the rose garden
- variety: rose cultivar identifier. GB="Gene Boerner", I="Impatient", IF="Ivory Fashion", MK="Margo Koster", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", U=unlabeled
- individual: rose individual
- branch: branch identifier
- Leaf: leaf identifier
- treatment: C=unmanipulated control, IC=inoculation control, M2=Aspergillus, M9=Bacillus, M122=Alternaria
- leaflets.x: number of leaflets on the leaf
- total: number of cuts that accumulated during the experiment
- baseline_cuts: number of cuts existing on the leaf before treatment application
File: hilic_all_leaflets_aspergillus.csv
Description: Contains metabolomic data collected through reversed-phase liquid chromatography, plus data on whether a leaf hosted Aspergillus
Variables
- ind: rose individual. Letter(s) indicate cultivar: I="Impatient", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", UB/UT=unlabeled
- cutstatus: whether a leaf was cut by leafcutter bees, cut-C or not cut-NC
- leaftreat: W=washed with sterile water, NW=not washed, SS=surface sterilized
- delta-Gluconic acid delta-lactone and similar: normalized area under the curve values for a given compound. Compounds that could not be confidently identified have been given alphanumeric names (e.g., us100). ".rel" after a compound name means that a column has relative abundance data.
- Prop.asp.Nigri: relative abundance of fungi belonging to Aspergillus sect Nigri
- prop.asp.all: relative abundance of all Aspergillus
- asp.nigri: presence/absence of fungi belonging to Aspergillus sect Nigri
- asp.all: presence/absence of all Aspergillus
File: pathogen_inhibition.csv
Description: Results of dual-culture experiments
Variables
- phylloplaneID: isolate code for phylloplane fungus
- pathogenID: genus and/or species name for pathogen
- pathogen toward: growth of pathogen toward phylloplane fungus
- pathogen. away: growth of the pathogen away from the phylloplane fungus
- phylloplane. genus: genus of phylloplane fungus
- Percent inhibition: calculated percent inhibition of radial growth
File: rose_phylloplane_communities.csv
Description: Data on rose phylloplane microbial communities from an observational survey
Variables
- plot: sub-area of the rose garden
- class: HTR=Hybrid Tea Rose, FR=Floribunda Rose, GR=Grandiflora Rose
- cultivar: AZ="Arizona", CI="Chrysler Imperial", FC="Fragrant Cloud", FP="First Prize", GB="Gene Boerner", I="Impatient", IF="Ivory Fashion", M="Medallion", MK="Margo Koster", O="Oregold", P="Peace", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", T="Tropicana", UB=unlabeled, V="Valentine"
- Individual: individual identifier
- Replicate: replicate identifier
- cut_notcut: whether the leaflet was cut by a leafcutter bee or not
- area: sampled leaflet area
- M_1 and similar: abundance (in CFU) of a given morphotype on a leaflet. M_2=Aspergillus sect. Nigri, M_9=Bacillus, M_122=Alternaria. ".pres" after a morphotype indicates that the column instead has presence/absence data for that morphotype.
- unknown: abundance (in CFU) of microbes that could not be assigned a morphotype, usually due to contamination
- total_abundance: total CFU for a leaflet
- abund*_*per_area: CFU/leaflet area
File: rp_all_leaflets_aspergillus.csv
Description: Contains metabolomic data collected through hydrophilic interaction liquid chromatography, plus data on whether a leaf hosted Aspergillus
Variables
- ind: rose individual. Letter(s) indicate cultivar: I="Impatient", RG="Red Gold", SF="Sun Flare", SS="Summer Snow", UB/UT=unlabeled
- cutstatus: whether a leaf was cut by leafcutter bees
- leaftreat: W=washed with sterile water, NW=not washed, SS=surface sterilized
- beta-Alanine and similar: normalized area under the curve values for a given compound. Compounds that could not be confidently identified have been given alphanumeric names (e.g., us100). ".rel" after a compound name means that a column has relative abundance data.
- Prop.asp.Nigri: relative abundance of fungi belonging to Aspergillus sect Nigri
- prop.asp.all: relative abundance of all Aspergillus
- asp.nigri: presence/absence of fungi belonging to Aspergillus sect Nigri
- asp.all: presence/absence of all Aspergillus
