Ecomorphological convergence following niche shifts in montane ground beetles (Carabidae: Nebria)
Data files
May 12, 2025 version files 1.36 MB
Abstract
https://doi.org/10.5061/dryad.m63xsj486
Description of the data and file structure
"Ecomorphological_convergence_following_niche_shifts_in_montane_ground_beetles_(Carabidae_Nebria)_all_specimens_no_NA.csv" contains measurements of each individual specimen.
Included in this file are the variables (in order left to right):
subspecies: Subspecies identifiers
id: An id number to distinguish specimens
sex: The sex of the specimen
pronotum_wide: The pronotum width at the widest point (mm)
pronotum_base: Pronotum width at the posterior end (mm)
elytra_width: Elytron width at the widest point (mm)
elytra_length: Elytron length at the longest point (mm)
scape: Scape length (mm)
elevation: Elevation where the specimen was collected (m)
substrate: Substrate type where the specimen was collected (1 = gravel (<10 cm in diameter), 2 = medium rocks (10-50 cm in diameter), 3 = large rocks (>50 cm in diameter, 4 = vegetation covered rocks, 5 = alpine (talus and/or snowfield))
color: Color used to identify the species for making figures
pronotum_ratio: The ratio of the pronotum at its widest point to its base
index: An identifying index number
Color: An identifying color (but not saved as type "character")
elytra_ratio: The ratio of the elytron at its widest point to its length
E1 - 28: Fourier decomposition features for elytral shape (denoted by the letter E).
P1 - 44: Fourier decomposition features for pronotal shape (denoted by the letter P).
Some entries under the last two variables are "NA". This stands for "not applicable" because these specific Fourier features were not required to accurately estimate the shape of the morphology.
The zip file named "Nebria_spp" contains images of all the specimens used in this study.
Elevation and coordinates (WGS84) for collection localities was estimated using Google Maps. Climatic variable information can be accessed at this site: https://www.worldclim.org/data/worldclim21.html. Variables used in this study included: mean annual temperature (Celsius), mean maximum temperature (Celsius), mean minimum temperature (Celsius), mean solar radiation (kJ per square meter per day), mean vapor pressure (kPa), mean precipitation (mm) and mean wind speed (meters per second).
Code/Software
R statistical software v4.2.0.1 was used for analysis (R Core Team 2021). The file "Ecomorphological convergence following niche shifts in montane ground beetles (Carabidae Nebria).R" contains analyses performed in this study.
Specimens from the California Academy of Sciences were used. Morphometrics were collected by photographing specimens on a Leica camera (Leica AG, 2020) and measured in ImageJ. Silhouettes of morphological features were created in Inkscape (Inkscape, 2020) and analyzed using Fourier decomposition analysis using the R package momocs (Bonhomme et al., 2014). Methods from Sansalone et al., 2020 and Stayton, 2015 were used to test for convergence. The R package RRphylo (Castiglione et al., 2019) was used to assess the rate of trait evolution. The online database Worldclim (Fick & Hijmans, 2017) was used to extract bioclimatic data for species. Google earth (Google Maps 2021) was used to estimate lat/long and elevation of species based on museum locality data. All analyses were performed using R statistical software v4.2.0.1 (R Core Team, 2021).
- Schat, Jillian; Ehlert, Elizabeth; Kavanaugh, David et al. (2025). Ecomorphological convergence following niche shifts in montane ground beetles (Carabidae: Nebria). Zenodo. https://doi.org/10.5281/zenodo.10115131
- Schat, Jillian; Ehlert, Elizabeth; Kavanaugh, David et al. (2025). Ecomorphological convergence following niche shifts in montane ground beetles (Carabidae: Nebria). Zenodo. https://doi.org/10.5281/zenodo.10115130
