Blocking microtubule deacetylation inhibits anaphase chromosome movements in crane-fly spermatocytes
Data files
Jan 21, 2026 version files 28.45 KB
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Backward_movement.csv
739 B
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Fig_2_.csv
6.03 KB
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Fig_5.csv
552 B
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Fig_7.csv
10.20 KB
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Figs_4.csv
2.91 KB
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README.md
5.47 KB
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Table_1_control_cells.csv
1.57 KB
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Table_1_treated_cells.csv
974 B
Abstract
Chromosome movement speeds during anaphase are regulated by depolymerization of microtubules. Several models describe chromosome movement during cell division but none of them consider post-translational modifications of tubulin, even though such modifications help specify microtubules for unique cellular activities. Among these modifications, acetylation of Lysine 40 is one of the common post-translational modifications. Acetylation of microtubules greatly improves their stability, especially when subjected to cooling or drug treatment. Since kinetochore microtubules are acetylated in a variety of eukaryote cells, we wondered whether deacetylation of kinetochore microtubules was necessary in order for microtubules to be able to depolymerize during anaphase. HDAC6 (Histone Deacetylase 6) deacetylates acetylated tubulin. To study whether tubulin must be deacetylated during anaphase, we added to living cells two different HDAC6 inhibitors (Tubacin and Trichostatin A), separately, as chromosomes moved poleward in anaphase. Both HDAC6 inhibitors altered chromosome movement: chromosomes either completely stopped moving, or moved more slowly, or sometimes continued movement without speed changes. The effects of the inhibitors on chromosome movement are reversible: half-bivalents either restarted anaphase movement by themselves or resumed their poleward movement after the inhibitor was washed out. We suggest that kinetochore microtubules need to be deacetylated in order for normal anaphase movements to occur.
The data package contains seven datasets:
- Fig_2_.csv
- Figs_4.csv
- Fig_5.csv
- Backward_movement.csv
- Fig_7.csv
- Table_1_control_cells.csv
- Table_1_treated_cells.csv
(1) Fig_2_.csv
This dataset contains 149N values with columns named "Distance (microm)" , "Acetylated_alpha_tubulin", and "Tyrosinated_alpha_tubulin". These three columns are the data before normalization of the Y axis (gray values of acetylated and tyrosinated tubulin) between 0 and 1. The next two columns, named "Normalized_Acetylated_alpha_tubulin" and "Normalized_Tyrosinated_alpha_tubulin", are the data after Y-axis normalization.
Variable names with descriptions:
- Distance (microm): shows the distance from the kinetochore of a microtubule to the pole.
- Acetylated_alpha_tubulin: shows the gray values (staining intensity) of acetylated tubulin of a fix line from the kinetochore to the pole.
- Tyrosinated_alpha_tubulin: shows the gray value (staining intensity) of the same line but on the Tyrosinated tubulin channel.
(2) Figs_4.csv
Tubacin
This dataset contains 106N values for 106 half-bivalents/or 53 pairs of chromosomes, and chromosome speed (microm/min) before drug treatment, after drug treatment, and after drug washout.
Variable names with descriptions:
- Drug treatments: shows the concentration of Tubacin that was used.
- The speed at the beginning (microm/min): shows the speed of each half-bivalent from the equatorial plane to the poles since the moment that anaphase started up to drug perfusion.
- The speed after drug treatment (microm/min): shows the speed of each half-bivalent since the drug was added.
- The speed after drug washout (microm/min): shows the speed of each half-bivalent after the drug was washed out by Ringer's solution.
(3) Fig_5.csv
TSA
This dataset contains 18N values for 18 half-bivalents/ or 9 pairs of chromosomes and chromosome speed (microm/min) before drug treatment, after drug treatment, and after drug washout.
Variable names with descriptions:
- Drug treatments: shows the concentration of TSA that was used.
- The speed at the beginning (microm/min): shows the speed of each half-bivalent from the equatorial plane to the poles since the moment that anaphase started up to drug perfusion.
- The speed after drug treatment (microm/min): shows the speed of each half-bivalent since the drug was added.
- The speed after drug washout (microm/min): shows the speed of each half-bivalent after the drug was washed out by Ringer's solution.
(4) Backward_movement.csv
Backward movement
This dataset contains 36N values for 36 half-bivalents/ or 18 pairs of chromosomes and the speed of chromosomes (microm/min) moving backward to the equatorial plane after drug treatment.
Variable names with descriptions:
- Drug treatments: shows the concentration of Tubacin that was used.
- Backward movement (microm/min): shows the speed of chromosomes moving backward after drug treatment.
(5) Fig_7.csv
This dataset contains columns named "Distance (microm)", "Control_cell", "TSA-treated", and "Tubacin-treated". These four columns are the data before normalization of the Y axis (gray values of acetylated tubulin in three different cells) between 0 and 1. The next three columns, named "Normalized_control_cell", "Normalized_TSA_treated", and "Normalized_Tubacin_treated", are the data after Y-axis normalization.
Variable names with descriptions:
- Distance (microm): shows the distance from the kinetochore of a microtubule to the pole.
- Control_cell: shows the gray value or staining intensity of the acetylated_tubulin in a normal control cell.
- TSA_treated: shows the gray value or staining intensity of the acetylated_tubulin in a TSA_treated cell.
- Tubacin_treated: shows the gray value or staining intensity of the acetylated_tubulin in a Tubacin_treated cell.
(6) Table_1_control_cells.csv
This dataset contains columns named "KT MTs", "FLAGELLUM MTs", "ratio KT MTs/Flagel", and "PREDICTED NUMBERS of KT-MTs" in control cells. The cell's ID and stage have been added at the top of each table in blue. In this dataset, we estimated the number of acetylated microtubules in the kinetochore fiber.
Variable names with descriptions:
- KT MTs: shows the maximum intensity of kinetochore microtubules
- FLAGELLUM MTs: shows the maximum intensity of flagella
- ratio KT MTs/Flagel: shows the values from dividing the "KT MTs" by "FLAGELLUM MTs".
- PREDICTED NUMBERS of KT-MTs: shows the values from multiplying the "ratio KT MTs/Flagel" by 20, because the flagellum has 20 microtubule filaments.
(7) Table_1_treated_cells.csv
This dataset contains columns named "KT MTs", "FLAGELLUM MTs", "ratio KT MTs/Flagel", and "PREDICTED NUMBERS of KT-MTs" in treated cells. The cell's ID and stage have been added at the top of each table in blue. In this dataset, we estimated the number of acetylated microtubules in the kinetochore fiber.
Variable names with descriptions:
- KT MTs: shows the maximum intensity of kinetochore microtubules
- FLAGELLUM MTs: shows the maximum intensity of flagella
- ratio KT MTs/Flagel: shows the values from dividing the "KT MTs" by "FLAGELLUM MTs".
- PREDICTED NUMBERS of KT-MTs: shows the values from multiplying the "ratio KT MTs/Flagel" by 20, because the flagellum has 20 microtubule filaments.
