Data and code from: Fertilization influences overyielding through dominance of species with high specific leaf area in young tree mixtures
Data files
Feb 04, 2026 version files 318.56 KB
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Community-level_data.csv
14.76 KB
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Metadata.xlsx
14.08 KB
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R_code_community-level_analysis.R
8.16 KB
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R_code_SLA_analysis.R
3.06 KB
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R_code_species-level_analysis.R
17.19 KB
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R_code_tree-level_analysis.R
3.30 KB
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README.md
1.49 KB
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SLA_data.csv
31.72 KB
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Species-level_data.csv
33.30 KB
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Tree-level_height_and_biomass_data.csv
191.49 KB
Abstract
This dataset accompanies the study “Fertilization influences overyielding through dominance of species with high specific leaf area in young tree mixtures” and documents the effects of nutrient addition on tree diversity–productivity relationships and community functional structure in young experimental forest communities. The data originate from a tree diversity experiment including monocultures and two- and four-species mixtures of six European tree species (Acer platanoides, Betula pendula, Larix decidua, Picea abies, Pinus sylvestris, and Quercus robur), grown with or without four consecutive years of mineral fertilization. The dataset comprises measurements at multiple hierarchical levels, including individual-tree data (tree height, stem diameter, aboveground woody biomass, and specific leaf area), species-level summaries, and community-level variables. Derived variables include trait-based metrics such as community-weighted means (CWM) and functional diversity (FD) of tree height and specific leaf area, as well as indices of species- and community-level overyielding. These data enable analyses of how fertilization influences productivity in mixed-species tree communities, both directly and indirectly, through changes in community functional trait structure and species composition.
Data and R code for:
Saito et al. (accepted in 2025) Functional Ecology
“Fertilization influences overyielding through dominance of species with high specific leaf area in young tree mixtures.”
This repository contains the data and R scripts required to reproduce the analyses presented in the manuscript.
Data files and R scripts
note: NA = missing data or not applicable
Metadata.xlsx
Provides a comprehensive glossary of all column names included in the following data files, including definitions, units, and relevant methodological notes.
Community-level_data.csv
Used by: R_code_community-level_analysis.R
- Each row represents one experimental plot (community).
- Used for community-level mixed-effects models and piecewise structural equation models.
Species-level_data.csv
Used by: R_code_species-level_analysis.R
- Each row represents one species within one plot (one row per species × plot).
- Used for species-level overyielding and trait-based mixed-effects models.
Tree-level_height_and_biomass_data.csv
Used by: R_code_tree-level_analysis.R
- Each row represents one individual tree within a plot.
- Used for tree height modelling and height–diameter modelling.
- Only living trees located in the inner 5 × 5 grid of each 7 × 7 plot are included.
SLA_data.csv
Used by: R_code_SLA_analysis.R
- Each row represents one individual tree.
- Used for modelling specific leaf area (SLA) at the tree level.
