Data from: Feeling disconnected: River fragmentation alters parenting, aggression, and risk-taking in threespine stickleback
Data files
Sep 23, 2025 version files 5.73 MB
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20250813_FieldData_EcolEvol.html
5.69 MB
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20250813_FieldData_EcolEvol.Rmd
34.74 KB
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AggressionData2022__Submission.csv
5.53 KB
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BoldnessData2022_Submission.csv
2.57 KB
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parentingdata2022_Submission.csv
1.49 KB
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README.md
4.51 KB
Abstract
Habitat fragmentation is a global challenge stemming from human-induced change. As habitat fragmentation is expected to worsen across time, there is a need to identify organism traits that can predict population persistence within fragments. Behavioral traits are primary candidates for understanding population response to fragmentation because behavior often serves as a first response to human-induced change. While behavior is a topic of interest in the context of habitat fragmentation, many studies are limited to investigating movement patterns. Parental care behaviors are directly tied to individual fitness and offspring survival, and may provide predictive value to population persistence under fragmentation. However, it remains unclear both whether and how parental care differs in organisms found in fragmented areas. We utilized the threespine stickleback (Gasterosteus aculeatus), a fish with obligatory paternal care, to examine the effects of aquatic fragmentation on parental care, territorial aggression, and juvenile risk-taking behavior. Following the identification of fragmented (pooled) and non-fragmented (connected) sites, we recorded parenting behaviors necessary for offspring survival. We then exposed territorial and parenting males to both a known and an unknown conspecific intruder to assess aggression. Finally, juveniles were measured in a risk-taking assay. Adult stickleback in fragmented sites showed a reduction in parental care and heightened aggression towards unknown conspecific intruders, while juveniles in fragmented sites were more hesitant to emerge into a novel environment. Altogether, our results provide support for changes in parental care within habitat fragments that may have generational consequences.
Dataset DOI: 10.5061/dryad.n8pk0p35h
Description of the data and file structure
This study investigates differences in behavioral phenotypes in stickleback found in pooled and connected areas of the Navarro River. From May to July 2022, we examined three different behaviors: parental care, aggression, and risk-taking. Adult males were used for parental care and aggression, while juveniles were used for risk-taking. All missing data are represented as NA.
Files and variables
File: BoldnessData2022_Submission.csv
Description: This dataset utilizes juvenile stickleback to study risk-taking behavior using a scototaxis assay. The assay was a 5-gallon bucket with half of the area covered in black duct tape and the other half covered in white duct tape.
Variables
- Site: Location of data collection (within pooled or connected area)
- Connected: Whether her site was considered pooled or connected
- ID: Individual
- Date: Date of observation (day/month/year)
- Time: Time of observation (12:00 am/pm)
- Latency: Time it took to emerge from a stickleback pod into a scototaxis assay (s). Maximum time allotted was 180 seconds.
- Startcol: Color of the assay tank that fish emerged into first (black or white)
- TimeWhite: Time spent in the white portion of the assay (s)
- pH: pH of the site
- temp: Temperature of the site (F)
File: parentingdata2022_Submission.csv
Description: This dataset contains direct care behaviors of adult male threespine stickleback found in pools and connected areas. Males were observed for a total of 10 minutes.
Variables
- site: Location of data collection (within pooled or connected area)
- pc: Whether the site was considered pooled or connected
- id: Individual
- date: Date of observation (day/month/year)
- time: Time of observation (12:00 am/pm)
- length: Length of the focal individual (in)
- lengthMM: Length of focal individual (mm)
- nest: Time spent on the nest (s)
- fanning: Time spent fanning (s)
- poke: Number of pokes at the nest (count)
- chase: Number of chases at intruders (count)
- glue: Number of gluing events at the nest (count)
- tunnel: Number of times an individual tunneled through the nest (count)
- nstage: Whether nests had eggs or fry (egg/fry)
- ndepth: Depth of nest (in)
- nearestn: Nearest neighbor distance (in)
- shore: Distance of nest to shore (in)
File: AggressionData2022__Submission.csv
Description: This dataset contains aggression behaviors of territorial and parenting male threespine stickleback found in pooled and connected areas. Males were exposed in random order to an empty cage, a neighbor (individual from the same site) or a stranger (individual from a different site).
Variables
- Site: Location of data collection (within pooled or connected area)
- connected: Whether the site was considered a pooled or connected area
- id: Individual
- date: Date of observation (day/month/year)
- time: Time of observation (12:00 am/pm)
- focal: The individual bis exhibitingaggressive behaviors
- focallength: Length of the focal individual (in)
- stim: The stimulus individual being placed in the cage
- stimlength: Length of the stimulus fish in the cage (in)
- stimlocality: Where the stimulus fish was taken from for assays
- exposureorder: The order that the empty cage, neighbor, or straws were presented to the focal fish (1,2,3)
- timetoorient: Time to orient to the intruder (s)
- totaltimeorient: Total time spent orienting towards the intruder (s)
- bite: Total number of bites at the intruder (count)
- fan on: Total time fanning nest during the aggression assay (s)
- poke: Total time poking nest during the aggression assay (count)
- chase: Total time chasing other intruders during the aggression assay (count)
- sshape: Total times a male forms an S shape at the intruder during the assay (count)
Code/software
Data were analyzed in R Studio Version 2023.03.0. Packages used include tidyverse, magrittr, rptR, car, lme4, ggpubr, MuMIn, lmerTest, emmeans, rstatix, patchwork, plyr. Code is included as an RMD file (20250813_FieldData_EcolEvol.Rmd) and HTML (20250813_FieldData_EcolEvol.html). The analysis is divided into three sections. Each section includes cleaning of each dataset, outlier checks, linear models, and plots for each behavior of interest within a section.
This study investigates differences in behavioral phenotypes in stickleback found in pooled and connected areas of the Navarro River, a single river system located in Philo, California. From May- July 2022, we collected behavioral data that can be placed into three major categories: parental care, aggression, and risk-taking. Adults males were used for parental care and aggression, while juveniles were used for risk-taking. All data was processed using R. Studio version 2023.03.0
