Data from: Grassland bud and shoot demography depend on both amount and frequency of nitrogen addition
Data files
Mar 06, 2026 version files 13.59 KB
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JEcol-2025-1472.zip
8.56 KB
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README.md
5.02 KB
Abstract
The amount and frequency of atmospheric nitrogen (N) deposition have dramatically increased, profoundly influencing population regeneration, community composition, and productivity in grasslands. Perennial species in grasslands primarily grow and expand clonally, yet it remains unclear how their belowground buds and aboveground shoots respond to the amount and frequency of N deposition.
We conducted a long-term (2008-2022) N addition experiment in a semiarid grassland. The experiment included nine addition amounts (0, 1, 2, 3, 5, 10, 15, 20, and 50 g N m-2 yr-1) and two addition frequencies: low frequency (twice per year) and high frequency (once per month). This allowed us to assess the interactive effects of N addition amount and frequency on bud density, shoot density, and the ratio of bud to shoot density (meristem limitation index, MLI) in semiarid grasslands.
We found that community bud and shoot densities declined with increasing N amount under biannual addition frequency but remained stable under monthly addition frequency. However, community MLI was unchanged under biannual addition frequency, but increased with increasing N amount under monthly addition frequency. Both N addition amount and frequency significantly altered the composition of community buds and shoots, with more pronounced effects under low versus high application frequency. Bud and shoot densities and MLI declined with N amount under both addition frequencies for bunchgrasses. In contrast, rhizomatous grasses exhibited increased bud density and MLI under monthly N addition, while shoot density remained unchanged regardless of addition frequency. These demographic responses did not alter aboveground net primary productivity (ANPP) but shifted community composition toward greater dominance of rhizomatous grasses under N addition.
Synthesis. These results suggest that grassland bud and shoot responses to N deposition depend on both the deposition amount and frequency. Commonly used low frequency N addition experiments may lead to inaccurate plant demographic and community responses to chronic N deposition.
Dataset DOI: 10.5061/dryad.nzs7h4552
Description of the data and file structure
We provide one archive file (JEcol-2025-1472.zip) containing two files: the main dataset in CSV format (Bud+ANPP_data.csv) and the R script used for statistical analyses (Code_budbank+ANPP.R).
The dataset file contains treatment information and data on belowground bud density, aboveground shoot density, meristem limitation index (MLI), and aboveground net primary productivity (ANPP) for the whole plant community and major functional groups (rhizomatous grasses and bunchgrasses) under different nitrogen (N) addition amounts and frequencies.
The R script (Code_budbank+ANPP.R) was used for generalized linear mixed model (GLMM) analyses to test the main effects and interaction effects of nitrogen addition amount and nitrogen addition frequency on bud density, shoot density, MLI, and ANPP.
The dataset includes 9 nitrogen addition amount levels × 2 nitrogen addition frequency levels × 6 blocks (expected total rows = 108, if no rows were removed).
This dataset contains no missing values. Values that are absent biologically/observationally are recorded as 0 rather than as missing values.
Files and variables
File: Code_budbank+ANPP.R
Description: It performs the generalized linear mixed model (GLMM) analyses in R_4.2.0 for treatment-effect significance testing.
Code_budbank+ANPP.R: GLMM analyses of nitrogen addition amount and frequency effects. It includes:
- GLMM analyses for the whole community;
- GLMM analyses for major functional groups (rhizomatous grasses, bunchgrasses);
- Tests of main effects of nitrogen addition amount (
Treat.N); - Tests of main effects of nitrogen addition frequency (
Treat.F); - Tests of interaction effects (
Treat.N × Treat.F) on bud density, shoot density, MLI, and ANPP.
File: Bud+ANPP_data.csv
Description: It contains the main analysis data for treatment effects on bud density, shoot density, MLI, and ANPP at the community level and functional-group level.
Each row represents one block-level experimental observation from a single sampling year in a long-term nitrogen addition experiment (2008–2022), under a specific nitrogen addition amount × frequency treatment combination.
Experimental design represented in this file
- Nitrogen addition amount levels:
N0,N1,N2,N3,N5,N10,N15,N20,N50 - Nitrogen addition frequency levels:
F2,F12 - Replication: 6 blocks (
Block1 = 1–6)
Variables
Treatment and design variables
- Block1: block identifier in the randomized complete block design (1–6)
- Treatment: combined treatment code (e.g.,
N0+F2,N10+F12) - Treat.N: nitrogen addition amount code (
N0,N1,N2,N3,N5,N10,N15,N20,N50) - Treat.F: nitrogen addition frequency code (
F2,F12)
Community-level variables
- Total.Bud (buds m^-2): total belowground bud density of the whole plant community
- Total.Shoot (shoots m^-2): total aboveground shoot density of the whole plant community
- Total.MLI (unitless): meristem limitation index of the whole plant community
Rhizomatous grasses
- RhizomatousGrass.Bud (buds m^-2): belowground bud density of rhizomatous grasses
- RhizomatousGrass.Shoot (shoots m^-2): aboveground shoot density of rhizomatous grasses
- RhizomatousGrass.MLI (unitless): meristem limitation index of rhizomatous grasses
Bunchgrasses
- Bunchgrass.Bud (buds m^-2): belowground bud density of bunchgrasses
- Bunchgrass.Shoot (shoots m^-2): aboveground shoot density of bunchgrasses
- Bunchgrass.MLI (unitless): meristem limitation index of bunchgrasses
ANPP variables
- RhizomatousGrass.ANPP (g m-2 yr-1): ANPP of rhizomatous grasses
- Bunchgrass.ANPP (g m-2 yr-1): ANPP of bunchgrasses
- Total.ANPP (g m-2 yr-1): total ANPP of the whole plant community
Abbreviations and treatment codes
- N: nitrogen (nitrogen addition)
- F: frequency of nitrogen addition
- MLI: meristem limitation index
- ANPP: aboveground net primary productivity
- F2: nitrogen addition applied twice per year
- F12: nitrogen addition applied 12 times per year (monthly)
- N0: 0 g N m-2 yr-1
- N1: 1 g N m-2 yr-1
- N2: 2 g N m-2 yr-1
- N3: 3 g N m-2 yr-1
- N5: 5 g N m-2 yr-1
- N10: 10 g N m-2 yr-1
- N15: 15 g N m-2 yr-1
- N20: 20 g N m-2 yr-1
- N50: 50 g N m-2 yr-1
Code/software
All statistical analyses included in this data package were performed in R 4.2.0, and we have provided the corresponding code used for generalized linear mixed model (GLMM) analyses of treatment effects.
The major R packages used in Code_budbank+ANPP.R include:
stringr
ggplot2
DHARMa
glmmTMB
MuMIn
reshape2
sjPlot
lmerTest
lme4
multcomp
emmeans
effectsize
