Data from: Variable viral loads and immune response in tan invasive ant’s native and introduced ranges
Data files
May 28, 2025 version files 376.69 KB
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long_baseline.csv
369.90 KB
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README.md
2.35 KB
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samples_AA_viruses_immunity.csv
1.64 KB
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Target_details.csv
2.80 KB
Abstract
Aim: Pathogens can play an important role in biological invasions. Introduced populations may be particularly vulnerable to pathogens due to factors such as low genetic diversity and high population density. However, introduced populations that escape their natural pathogens may reallocate resources away from immunity and towards growth and reproduction. Interestingly, introduced ants have been suggested to have increased tolerance to new pathogens, contributing to their success as introduced species. In this study, we aimed to investigate whether introduced Argentine ant populations harbour different viral loads compared to native populations and if these differences were related to immunity-related gene expression.
Location: The study was conducted across the native range of Argentine ants in Argentina and four introduced regions in California, France, Australia, and New Zealand.
Methods: We used RT-qPCR to quantify viral loads and gene expression in the ants. We analysed 15 different potentially pathogenic viruses across the Argentine ant’s native and introduced ranges.
Results: We found that five viruses, LhuPcV1, LhuPiLV1, LhuCV1, Kashmir Bee virus, and LHUV-1, presented high loads in Argentine ants compared to the other viruses we screened. We found a significant effect of range on viral infections: high viral loads were commonly found in ants from introduced populations, which also exhibited increased immune gene expression. We found highly significant correlations between viral loads and expression of immune and metabolic genes. However, these associations were not fully consistent across the studied regions, indicating the complexity of eco-immunological phenomena.
Main conclusions: Our results suggest that introduced Argentine ant populations host different viral communities compared to native populations and that these differences are correlated with changes in immunity-related gene expression. The study highlights the complex role of pathogens in biological invasions and the importance of considering eco-immunological factors when assessing the impact of introduced species.
Dataset DOI: 10.5061/dryad.pg4f4qrvs
Description of the data and file structure
We collected qPCR data for 15 viruses and 21 immune genes in Argentine ant populations in their native range in Argentina as well as in the introduced range in California, Europe, Australia and Aotearoa/New Zealand.
Files and variables
File: samples_AA_viruses_immunity.csv
Description: Information on individual samples included in the study
Variables
- "Sample" is a unique sample identifying number
- "Country" is the country of origin (AR for Argentina, CA for California, EU for France, AU for Australia, NZ for Aotearoa/New Zealand)
- "Site" is the collection site
- "Ants" is the number of worker ants constituting each sample
- "Subcolony" is the experimental colony ID from which the sample was taken from
- "Plate" is the TaqMan array card ID used to run qPCR assays
File: Target_details.csv
Description: Information on the qPCR target characteristics
Variables
- "TargetName" is the name of the qPCR target used in the R script
- "Target" are the targets names in plot-friendly format
- "TargetType" refers to the type of target (e.g. immune gene, virus, bacteria)
- "Family" and "Group" refers to more specific characteristics of each target (e.g. immune pathway or microbe type)
File: long_baseline.csv
Description: Raw results of the qPCR assays
Variables
- "SampleName" is unique sample identifier
- "TargetName" is the qPCR assay target
- "MeanEquivalentCq" is the Cq value
Code/software
File: AA_viruses_immunity_pub.R
Description: R script deposited on the Zenodo repository, following the same section structure as the Results section of the manuscript. Packages required: "ggplot2"; "gplots"; "gridExtra"; "pgirmess"; "RVAideMemoire"; "car"; "ade4"; "factoextra"; "nlme"; "vegan"; "multcomp"; "digest"; "ggpubr"; "egg"; "cowplot"; "viridis"; "PerformanceAnalytics"; "reshape2"; "lme4"; "lmerTest"; "MuMIn"; "FSA"; "dplyr"; "pheatmap"; "RColorBrewer"; "reshape2"; "reshape"; "vegan"; "cowplot"; "BiodiversityR"; "ggVennDiagram"; "factoextra"; "ggmap"; "ggsn"; "raster"; "mixOmics"; "plyr"; "colorspace"; "pairwiseAdonis"; "reporttools"
The study was conducted across the native range of Argentine ants in Argentina and four introduced regions in California, France, Australia, and New Zealand. In each region, worker ants were collected from up to four different sites. We used RT-qPCR to quantify viral loads and gene expression in the ants. We analysed 15 different potentially pathogenic viruses across the Argentine ant’s native and introduced ranges.
- Felden, Antoine; Baty, James W.; Chapple, David G. et al. (2024). Variable viral loads and immune response in an invasive ant's native and introduced ranges. Diversity and Distributions. https://doi.org/10.1111/ddi.13867
- Felden, Antoine; Baty, James W.; Chapple, David G. et al. (2025). Data from: Variable viral loads and immune response in tan invasive ant's native and introduced ranges. Zenodo. https://doi.org/10.5281/zenodo.7905734
- Felden, Antoine; Baty, James W.; Chapple, David G. et al. (2025). Data from: Variable viral loads and immune response in tan invasive ant's native and introduced ranges. Zenodo. https://doi.org/10.5281/zenodo.7905733
