Data from: On the spatial clustering of behavioural phenotypes: Matching movement tactics with landscape structure in a large herbivore
Data files
Nov 21, 2025 version files 398.56 KB
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data_movement_traits_spatial_analysis.RData
355.77 KB
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README.md
6.26 KB
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spatial_matrix.RData
5.15 KB
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spatialisation_personality.R
31.38 KB
Abstract
In the wild, individuals consistently differ in movement and space use behaviours, depending on their personality. This variation can lead to personality-habitat associations and spatial structuring, potentially generating individual niche segregation. We explored the link between personality and landscape composition and structure in a population of free-ranging roe deer (Capreolus capreolus), predicting that i) individuals with similar movement tactics would occupy similar ecological niches, which should result in ii) spatial clustering of personalities in heterogeneous landscapes with personality-alike individuals being closer to each other in space than by chance Using GPS and activity data from 263 roe deer, we calculated five movement-based personality traits. We evaluated the association between movement phenotypes and habitat by comparing the among-individual similarity in movement behaviour to their similarity in home range composition and structure. Additionally, we conducted spatially explicit analyses to quantify the spatial clustering of these traits. Our results reveal that individuals with similar daytime use of open habitats, an indicator of boldness, occupy the same ecological niche with respect to woodland availability and habitat homogeneity, leading to strong spatial clustering in this trait. In contrast, home range size, average movement speed, and road diurnality (i.e, an individual’s propensity to get closer to a road during daytime) were spatially structured only at a small scale. Additionally, we found no spatial structure in activity level, and neither activity nor road diurnality was associated with landscape composition and structure. Matching movement-based personality traits with landscape features revealed spatial clustering of personalities. This non-random distribution could have implications for managing wild ungulate populations, segregating ecosystem services (e.g., nutrient fluxes) and disservices (e.g., road collisions) across the landscape.
Dataset DOI: 10.5061/dryad.sj3tx96jb
Description of the data and file structure
Data and R code to reproduce the results of the article : "On the spatial clustering of behavioural phenotypes: matching movement tactics with landscape structure in a large herbivore".
Files and variables
File: spatial_matrix.RData
Description: Barycentres of the locations of the roe deer individuals.
Description of the columns :
- ID : unique identifier of the individuals
- X and Y : coordinates of the barycentres of all locations for each individual, projected in Lambert 93 (in m).
File: data_movement_traits_spatial_analysis.RData
Description: Movement traits for each month and roe deer individual.
Description of the columns :
- ID : unique identifier of the individuals
- month : the month over which the movement traits are averaged
- year : the year of monitoring of the individual and month
- number_fixes_speed : the number of locations used for the calculation of the average movement speed during the corresponding month
- average_daily_speed : the movement trait "Average movement speed (AVGspeed)" used to characterise exploration (in m/h)
- hr_size_kernel_90 : the movement trait "Home range size (HR size)" used to characterise exploration (in ha)
- number_locations_home_range : the number of GPS locations used to calculate the home range size during the corresponding month
- mean_ODBA_all : the movement trait "Activity (ODBA)" used to characterise activity
- number_fixes_activity_all : the number of GPS locations used to calculate the ODBA during the corresponding month
- number_locations_day : the number of fixes recorded during daytime (at noon) during a given month
- number_locations_night : the number of fixes recorded during nighttime (at midnight) during a given month
- number_locations_day_without_manmade : the number of fixes recorded during daytime (at noon) during a given month without the manmade infrastructures
- number_locations_night_without_manmade : the number of fixes recorded during nighttime (at midnight) during a given month without the manmade infrastructures
- number_open_locations_day : the number of fixes recorded during daytime (at noon) during a given month in the open habitats
- number_open_locations_day_with_hedge : the number of fixes recorded during daytime (at noon) during a given month in the open habitats with the hedges considered as an open feature and not a closed feature
- number_open_locations_day_without_manmande : the number of fixes recorded during daytime (at noon) during a given month in the open habitats without the manmade infrastructures
- probability_open_day_with_hedge : the movement trait "Probability of using open habitats during daytime (POH)" used to characterise boldness
- number_fixes_distances_all : the number of locations used for the calculation of the diurnality of the distance to roads during the corresponding month
- mean_distance_road_all : the mean distance in m of an individual from the road during a given month (daytime and nighttime both included)
- mean_distance_road_day : the mean distance in m of an individual from the road during a given month during daytime
- mean_distance_road_night : the mean distance in m of an individual from the road during a given month during nighttime
- diurnality_road : the movement trait "Diurnality of the distance to roads (Droad)" used to characterise boldness
- ani_sexe : the sex (M male and F female) of the individual
- cap_age_classe : the age class of the individual ("adulte" for adults and "yearling" for yearlings)
- cap_poids : the weight in kg of the individual measured at capture
- proportion_culture_fall : the proportion of autumn crops in the home range of the individual
- proportion_water : the proportion of water bodies in the home range of the individual
- proportion_woodland : the proportion of woodland in the home range of the individual
- proportion_meadow_natural : the proportion of natural meadows in the home range of the individual
- proportion_hedges : the proportion of hedges in the home range of the individual
- proportion_culture_summer : the proportion of summer crops in the home range of the individual
- proportion_friche : the proportion of scrublands in the home range of the individual
- proportion_roads : the proportion of roads and pathways in the home range of the individual
- proportion_missing : the proportion of unidentified landscape features in the home range of the individual
- proportion_manmade : the proportion of manmade infrastructures in the home range of the individual
- mean_distance_roads : the average distance in m of an individual from roads depending on its home range (calculated using random points sampled from its home range)
- mean_distance_manmade : the average distance in m of an individual from manmande infrastructures depending on its home range (calculated using random points sampled from its home range)
- mean_distance_hedge : the average distance in m of an individual from hedges depending on its home range (calculated using random points sampled from its home range)
- Contagion_Index.value : the contagion index calculated to index habitat homogeneity
- mean_day_length : the average duration of the day during a given month
File: spatialisation_personality.R
Description: Code to perfom all the analyses used in the article. This workflow quantifies how individual movement traits are spatially structured by first modelling multiple traits jointly to extract individual-level estimates, then testing whether those traits show spatial autocorrelation.
Code/software
The visualisation of the code and data require the software R, with or without Rstudio.
Access information
Capreolus capreolus is not an endangered species and the population is not threatened. The coordinates of the barycentres were used to perform the analyses and make the map found in the published article. For more information on the data, do not hesitate to contact the authors (ines.khazar@hotmail.fr).
