Data from: Scaling of shoot and root respiration of woody and herbaceous plants
Data files
Dec 04, 2024 version files 487.91 KB
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data.respiration.csv
418.55 KB
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README.md
5 KB
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Results.by.dataset.csv
612 B
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Results.by.functionaltype.csv
2.04 KB
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script.R
47.46 KB
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specieslist.by.dataset.csv
4.85 KB
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specieslist.by.functionaltype.csv
9.40 KB
Abstract
Woody and herbaceous plants are the main components of global terrestrial ecosystems, and their growth, adaptation, and survival depend largely on metabolism of shoots and roots. Therefore, understanding the size-scaling of metabolic rates in woody and herbaceous plants, and in shoots and roots, is a fundamental issue in ecology. However, few empirical studies have examined metabolic scaling exponents in a wide mass range of plants. Using whole-plant chamber systems, we measured respiration rates of entire root systems and shoots of 96 woody species (n = 1243) and 33 herbaceous species (n = 463) from various terrestrial biomes, with plant masses spanning nine orders of magnitude. Scaling exponents for relationships between respiration rates and fresh mass were greater in shoots than in roots, and both were greater in herbaceous plants than in woody plants. Furthermore, scaling of whole-plant respiration, including various species, converged separately for woody and herbaceous plants. These findings suggest some general physico-chemical constraints on energy use by shoots and roots of individual plants in various terrestrial biomes, including forests and grasslands. These data will advance understanding of terrestrial ecosystem structure and function.
https://doi.org/10.5061/dryad.sxksn03cj
Description of the data and file structure
Files and variables
File: data.respiration.csv
Description: Dataset of respiration rates. The data of woody plants were taken from Mori et al. (2010) and Kurosawa et al. (2023) and additional measurement performed for the present study.
Variables
- Life form: woody or herbaceous
- Species: plant species
- Ovle: ovule type, angiosperm or gymnosperm (for woody species)
- Phenology: deciduous or evergreen (for woody species)
- Cotyledon: monocots or eudicots (for herbaceous species)
- Life cycle: annual, biennial, or perennial (for herbaceous species)
- Part: plant parts (whole plant, shoot, or root)
- Fresh mass: fresh mass (kg)
- Respiration: respiration rates (μmol CO2 s^−1)
- Reference: reference for the data
References
Mori S et al. 2010 Mixed-power scaling of whole-plant respiration from seedlings to giant trees. Proc. Natl. Acad. Sci. U. S. A. 107, 1447–1451. (doi:10.1073/pnas.0902554107)
Kurosawa Y. et al. 2023 Ontogenetic changes in root and shoot respiration, fresh mass and surface area of Fagus crenata. Ann. Bot. 131, 313–322. (doi:10.1093/aob/mcac143)
Kurosawa Y, Mori S, Wang M, Ferrio JP, Yamaji K, Koyama K, Haruma T, Doyama K. 2021 Initial burst of root development with decreasing respiratory carbon cost in Fagus crenata Blume seedlings. Plant Species Biol. 36, 146–156. (doi:10.1111/1442-1984.12305)
File: specieslist.by.dataset.csv
Description: Information for analysis of the phylogeny in the datasets from Mori et al. (2010), from Kurosawa et al. (2023), and the dataset obtained during this work.
Variables
- Species: plant species
- Genus: genus to which the species belongs to
- Family: family to whilch the species belongs to
- Lifeform: Whether the species belongs to woody or herbaceous species
- n_Kurosawa et al 2023: number of data taken from the datasets from Kurosawa et al. (2023)
- n_Mori et al 2010: number of data taken from the datasets from Mori et al. (2010)
- n_present study: numer of data taken from the dataset obtained during this work.
File: specieslist.by.functionaltype.csv
Description: Information for analysis of the phylogeny in various functional type.
Variables
- Species: plant species
- Genus: genus to which the species belongs
- Family: family to which the species belongs
- Life form: woody or herbaceous
- Ovle: ovule type, angiosperm or gymnosperm (for woody species)
- Phenology: deciduous or evergreen (for woody species)
- Cotyledon: monocots or eudicots (for herbaceous species)
- Life cycle: annual, biennial, or perennial (for herbaceous species)
- n_root: number of data for root respiration
- n_shoot: number of data for shoot respiration
- n_whole: number of data for whole-plant respiration
File: Results.by.dataset.csv
Description: Results of MCMCglmm analysis for the scaling respiration rates of woody species by three datasets: the dataset from Mori et al. (2010), from Kurosawa et al. (2023), and the dataset obtained during this work.
Variables
- Lifeform: whether the analysis is for woody or herbaceous plants
- Dataset: datasets used for analysis
- Part: plant parts
- N: number of sample plants
- slope.post.mean: posterior mean of slope
- slope.lower.95CI: lower value of the 95%CI of the slope
- slope.upper.95CI: upper value of the 95%CI of the slope
- slope.eff.samp: effective sample size
- slope.pMCMC: MCMC p-values
- intercept.post.mean: posterior mean of intercept
- intercept.lower.95CI: lower value of the 95%CI of the intercept
- intercept.upper.95CI: upper value of the 95%CI of the intercept
- intercept.eff.samp: effective sample size
- intercept.pMCMC: MCMC p-values
- Rhat: R-hat by Gelman–Rubin statistic
File: Results.by.functionaltype.csv
Description: Results of MCMCglmm analysis for the scaling of respiration rates in various functional groupes
Variables
- Lifeform: whether the analysis is for woody or herbaceous plants
- Group: plant functional groupes
- Part: plant parts
- N: number of sample plants
- slope.post.mean: posterior mean of slope
- slope.lower.95CI: lower value of the 95%CI of the slope
- slope.upper.95CI: upper value of the 95%CI of the slope
- slope.eff.samp: effective sample size
- slope.pMCMC: MCMC p-values
- intercept.post.mean: posterior mean of intercept
- intercept.lower.95CI: lower value of the 95%CI of the intercept
- intercept.upper.95CI: upper value of the 95%CI of the intercept
- intercept.eff.samp: effective sample size
- intercept.pMCMC: MCMC p-values
- Rhat: R-hat by Gelman–Rubin statistic
File: script.R
Description: All codes to perform MCMCglmm analysis for Bayesian phylogenetic generalized linear mixed models and to reproduce the figures 3–5.
