High throughput sequence data for association and description of female Calicnemia haksik (Odonata: Platycnemididae)
Data files
Apr 18, 2025 version files 1.42 GB
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concatenated_smatrix.fas
521.54 KB
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partition.best_model.nex
4.04 KB
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raw_sequences.zip
1.42 GB
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README.md
1 KB
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tree.contree
1.78 KB
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tree.treefile
1.78 KB
Abstract
High throughput sequencing is a cost and time effective method for associating sexually dimorphic species. Increasing the available taxonomic understanding of females is important for biodiversity and conservation efforts. Here, we confirm the association of females caught in copulation with Calicnemia haksik Wilson and Reeds males in Vietnam using high throughput sequencing (92 loci) and provide the description of the female.
https://doi.org/10.5061/dryad.tb2rbp094
Description of the data and file structure
- The zipfile "raw_sequences" contains the raw reads received from LGC-Genomics. There is a textfile "sequence_filenames" which correlates the forward and reverse folders with each taxon used in the study.
- The concatenated alignment that was used for phylogenetic reconstruction is provided in the file titled "concatenated_smatrix".
- The file "partition.best_model" is the results of PartitionFinder and ModelFinder. It provides which loci are in each partition and the best model associated with that partition.
- The results from IQtree are provided in "tree.contree" (consensus tree) and "tree.treefile" (maximum likelihood). The phylogenetic reconstruction presented in the paper is based on the maximum likelihood reconstruction.
- Wade, Cordon D; Sutherland, Laura N; Lupiyaningdyah, Pungki et al. (2025). High throughput sequence data for association and description of female Calicnemia haksik (Odonata: Platycnemididae). Insect Systematics and Diversity. https://doi.org/10.1093/isd/ixaf014