Data from: Predicting oxygen thresholds of marine taxa to improve ecological forecasts
Data files
Jan 21, 2026 version files 7.44 MB
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all_distribution_data.csv
7.28 MB
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allpcritdata_alphia.csv
160.13 KB
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README.md
3.45 KB
Abstract
Dataset DOI: 10.5061/dryad.vhhmgqp7w
Description of the data and file structure
Overview
This repository contains data collated from a meta-analysis of laboratory PCrit measurements on marine animal species, and survey data from NOAA-Fisheries, Department of Fisheries and Oceans, Canada, and the International Pacific Halibut Commission. Any NA represents missing data.
Files and variables
File: allpcritdata_alphia.csv
Description: Summary of respirometry-basPCritrit measurements derived through literature search.
Variables
- Scientific Name: Genus species name
- Temperature_experimentaltal temperature Celsiusius
- W_g: individual or average body size (grams)
- Pcrit_kPa: measured critical oxygen partial pressure (kPa)
- AphiaID: Unique taxa identifier, from WoRMS
- lowest.taxon: Lowest taxonomic level (species or genus) that taxa can be identified to
- Source: Citation for source paper
- RespSetup: Describes respirometer setup, as either "closed", "intermittent", or "flowthrough" respirometry.
- O2Control: "drawdown" or "controlled". Drawdown means that oxygen levels in the experimental chamber were reduced through the experimentalorganism'ss respiration. Controlled means that there was a deliberate and controlled manipulation of experimental oxygen.
- EstMethod_Metric: Describes the endpoint used to define pcrit: either the point at which species became oxyconformers ("oxyconform"), or when oxygen consumption dropped below standard metabolic rate ("smr")
- Notes: Any notes on the experimental setup
- Phylum: Taxa phylum
- Class: Taxa Class
- Order: Taxa Order
- Family: Taxa Family
File: all_distribution_data.csv
Description: Survey data in the Northeast Pacific Ocean for Canary Rockfish, Longspine thornyhead, Dover sole, Pacific hake, Pacific Halibut, and Pacific cod
Variables
- event_id: unique identifier for sampling event
- survey: name of ageconductingcing survey: dfo, iphc or nwfsc- either "Department of Fisheries and Oceans, "International Pacific Halibut Commission, or "Northwest Fisheries Science Centerenter
- date: date and time (YYYY-MO-DD HH: MM) of sample start
- lat_start: starting point (degrees N latitude)
- lon_start: starting point (degrees W longitude)
- lat_e nd: starting point (degrees N latitude)
- lon _end: starting point (degrees W longitude)
- effort: amount of sampling effort for tow or set
- effort_units: area swept for trawl-based samples. ha for hectare or NA for longline
- year: survey year
- bottom_temp_c: measured bottom temperature Celsiusius
- catch_numbers: number of individuals captured
- scientific_name: Genus species name of taxa
- common_name: Common name of taxa
- po2_kpa: Estimated partial pressure (kPa) of oxygen
- depth_m: Bottom depth in meters.
Code/software
All data files are provided as .csv files, which are widely accessible in a variety of software.
Access information
Other publicly accessible locations of the data:
Data was derived from the following sources:
- Literature review, survey_join R package (https://github.com/DFO-NOAA-Pacific/surveyjo,in) and International Pacific Halibut Commission
