Unveiling the role of foliar fungi in mediating leaf photosynthesis under global change
Data files
Oct 13, 2025 version files 63.15 KB
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Correlation_upload.csv
6.34 KB
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Photo_upload.csv
29.14 KB
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Phyllosphere_Photosythesis_code.R
18.19 KB
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phyllosphere_upload.csv
4.21 KB
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Pot_experiment_upload.csv
2.67 KB
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README.md
2.61 KB
Abstract
Global nitrogen (N) deposition and changes in precipitation patterns profoundly influence leaf photosynthesis and carbon sequestration in terrestrial ecosystems. Foliar fungi, a critical microbial community on leaf surfaces, could simultaneously impact several leaf functions. However, the regulated effects of foliar fungi on leaf photosynthesis in response to nitrogen and water additions remain unclear. Here, using a long-term field and a complementary pot fungicide experiment in an alpine meadow, we quantified the effects of nitrogen and water addition on leaf photosynthesis and foliar fungal communities in two dominant species.
Dataset DOI: 10.5061/dryad.w0vt4b95p
Description of the data and file structure
Overview
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This study includes four data files (CSV format) and one analysis file (R). All data and code referenced in the main text have been uploaded.
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Some data mentioned in the Supplementary Information (SI) relate to other, currently unpublished manuscripts. If needed, please contact: heychhh@163.com**.**Notes added for clarity:
The four CSV files and the single R script are sufficient to reproduce all analyses and figures reported in the main text.
Additional SI-related datasets are not required to reproduce the main results described in the article.
Files and variables
Files at a glance
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data/— four CSV files (file names listed below)Photo_upload.csv— [Experimental Plot Leaf Photosynthetic Measurement Data]phyllosphere_upload.csv— [Field-Measured Data on Phyllosphsere Fungal Diversity in Experimental Plots]Correlation_upload.csv— [Data compilation on the mean values of leaf photosynthetic traits at the plot scale and Phyllosphsere fungal diversity]Pot_experiment_upload.csv— [Potted Plant Experiment: Leaf Photosynthetic Capacity Response Data Table]
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Phyllosphere_Photosythesis_code.R — the complete R workflow used for data cleaning, statistics, and figure generation for the main text.
Please replace
XXXX*.csvwith your actual file names and a one-line description each.
Variables
- Year: Experimental year
- Seq: Measurement sequence
- Block: Experiment block
- Treatment: Experimental treatment setup
- groupW/W.add/W.add1: Whether to water addition
- groupN/N.add/N.add1: Whether to nitrogen addition
- Species/Species1: Experimental subjects
- A: Light-saturated CO2 assimilation capacity
- gsw: Stomatal conductance
- Fungi_Chao1: Phyllosphere fungal Chao1 index
- Fungi_Shannon: Phyllosphere fungal Shannon index
- N: Leaf nitrogen content
- Fungicide: The fungicide treatment
- lnRR.A: The logarithm-transformed response ratio of A (Light-saturated CO2 assimilation capacity)
Code/software
The code (Phyllosphere_Photosythesis_code.R) was also uploaded. All meta-analyses were conducted in R software (version 4.3.3; R Core Team) and figures were generated using the ‘ggplot2’ package.
Access information
Other publicly accessible locations of the data:
- NA
Data was derived from the following sources:
- NA
Site description
The experiment was conducted at Haiyan County (36.92° N, 100.94° E, 3090 m a.s.l), located on the northeastern Qinghai-Tibetan Plateau. This region has a mean annual temperature of 0.94°C and mean annual precipitation of 404.66 mm, with approximately 80% of precipitation occurring during the growing season (June to August). The vegetation at this site is dominated by Carex alatauensis and Leymus secalinus. The soil at the study site is classified as Mat-Gryic Cambisol with a clay-loam texture. Additionally, the soil pH is approximately 8.09, soil total carbon concentration is 21.28 g kg-1, and soil total nitrogen concentration is 3.33 g kg-1.
Experimental design
Our study conducted both a long-term field experiment and a complementary pot experiment. The field experiment was separated from the adjacent pot experiment by 5 m buffer zone.
Field experiment
The nitrogen (N) and precipitation addition experiment has been established since 2017. Nitrogen was applied as urea at a rate of 10 g N m-2 year-1, manually distributed before the onset of the annual growing season (late April). Increased precipitation treatment was simulated by adding water equivalent to 10% of the mean annual precipitation (approximately 40 mm), distributed across eight events: twice in June, and three times each in July and August. Therefore, the experiment included four treatments: control, (CK), no nitrogen or water addition; nitrogen addition, (N, 10 g N m-2 year-1); water addition (W); nitrogen and water addition, (NW, 10 g N m-2 year-1 with water addition). Each treatment was conducted with 5 replicates. Plots were 3 × 3 m in size, which were randomly distributed with a 1 m buffer zone separating adjacent plots.
Within each plot, species composition and height were recorded in a 0.5 × 0.5 m quadrat throughout the study period. Above-ground net primary productivity was measured annually at its peak (early August) by clipping all above-ground biomass at ground level. The samples were sorted by species, oven-dried at 70 °C for 48 hours to a constant weight, and above-ground net primary productivity was calculated. Dominant species were identified based on their contribution to total above-ground net primary productivity, with Carex alatauensis and Leymus secalinus selected as the focus species for further analysis.
Pot experiment
For further verify the role of foliar fungi community, a pot experiment was conducted in 2023 nearby the experimental field, following the same treatment design as the field experiment. Polyvinyl chloride pipes with a diameter of 16 cm were cut into 20 cm height pots. Each pot was filled with 6 kg of air-dried, sieved (0.2 mm) clay-loam soil collected from the experimental field. Dominant plant species, C. alatauensis and L. secalinus, were transplanted into the pots from experimental field in mid-August 2023. To ensure sufficient plant survival after the winter and spring, five individuals of C. alatauensis and three individuals of L. secalinus were maintained in each pot. Each treatment was conducted with 5 replicates.
Before foliar fungicide treatment, we ensured that the plants were mature. Foliar fungicide treatments were applied after the first water addition in July 2024, using "Score Profi" (25.0% Difenoconazole) and "Ortiva" (10% Azoxystrobin) to investigate the role of foliar fungi on leaf photosynthetic properties.
