Abiotic environments can modify the penetrance of transgene-based lethality systems for insect population control
Data files
May 21, 2025 version files 69.96 KB
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AbioticStress-dataset-hatching-nutrition.csv
4.58 KB
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AbioticStress-dataset-hatching-shock.csv
2.44 KB
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AbioticStress-dataset-hatching-temperature.csv
8.22 KB
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README.md
8.39 KB
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TransgenicExpression-dataset-nutrition-adult.csv
7.82 KB
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TransgenicExpression-dataset-nutrition-development.csv
6.33 KB
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TransgenicExpression-dataset-temperature-adult.csv
7.45 KB
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TransgenicExpression-dataset-temperature-devo.csv
6 KB
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TransgenicExpression-dataset-temperature-embryo.csv
8.95 KB
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TransgenicExpression-dataset-temperature-shock.csv
9.78 KB
Abstract
Modern genetic biocontrol techniques for insect pest management, when compared to chemical insecticide spraying, offer high species specificity and reduced environmental impact. However, some of these methods require the environmental release of genetically modified insects. Because organisms exposed to different environments often show variability in phenotype and gene expression, it is likely that genetically modified insects will also experience environmentally mediated variation, potentially compromising pest control efficiency. This study examines the impact of temperature and nutrition on the early embryonic Tet-off conditional lethality system in Drosophila melanogaster. By independently manipulating parental and offspring environments, we assessed how treatment exposure influenced the probability of larval hatching and the transcript abundance of the transgenic system. Our findings revealed that (1) transgene performance distinctly responds to temperature and nutrition, (2) thermal stress has a greater impact when embryos, rather than parents, are exposed, and (3) extreme nutritional conditions can markedly reduce the penetrance of transgenic lethality. Although changes in transgene transcript abundance were observed, they did not fully explain the phenotypic variation, suggesting that factors downstream of transcription likely drive variation in transgenic lethality.
https://doi.org/10.5061/dryad.x0k6djhw3
Description of the data and file structure
Two kinds of experiments were conducted, the larvae hatching datasets describe the number of fly embryos that hatch in a sample and the transcript abundance datasets describe the cycle thresholds (CTs) of the genes of interest (driver = "TTA", effector = "HIDA5", and reference = "RP49") in transgenic embryos during the activation of the transgene under study (see manuscript).
Samples were collected in a series of blocks with multiple treatments in each of them. The experimental variables associated to the replication design and are for random effects in the statistical analysis are also included in each case.
Files and variables
File: AbioticStress-dataset-hatching-nutrition.csv
Description: Describes the frequency of hatching events in a sample of embryos whose parents were exposed to nutritional treatments
Variables
- treatment: value indicates the nutritional treatment, "1h" = high P:C ratio, "2e" = equal P:C ratio (see note 1), "3l" = low P:C ratio, "4q" = quarter diet, "5d" = desiccation treatment
- stage: indicates the life stage of exposure, "1d" = development, "2a" = adult
- level: verbose variable equivalent to treatment, "1high P:C" for "1h", "2equal P:C" for "2e", "3low P:C" for "3l", "4quarter" for "4q", "5diss" for "5d"
- cross: identifier variable for control "c" or experimental "X" sample
- replicate: indicates the replicate number of the sample, "1", "2" and "3" were used for analysis, samples with value "0" were considered burnout samples and were not included
- block: indicates the block number that the sample belongs, variable used for modeling random effects
- total: total number of embryos in the sample
- hatch: number of embryos hatched
- hrate: hatching rate calculated as "hrate = hatch / total"
- cohort: indicates the experimental replicate, that is cohort "1" for the first replicate, etc.
File: AbioticStress-dataset-hatching-shock.csv
Description: Describes the frequency of hatching events in a sample of embryos whose parents were exposed to thermal shock treatments
Variables
- treatment: value indicates shock treatments as "k"
- temp: treatment level, "control" = 25°C, "heat" = 34°C, "cold" = 4°C
- hours: numerical variable indicating the number of hours, either "1", "2", "4", "24", or "48"
- cross: identifier variable for control "0" or experimental "1" sample
- replicate: indicates the replicate number of the experiment, "1", "2" and "3"
- total: total number of embryos in the sample
- hatch: number of embryos hatched
- hrate: hatching rate calculated as "hrate = hatch / total"
File: TransgenicExpression-dataset-nutrition-adult.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos whose parents were exposed to nutritional treatments during adulthood
Variables
- Experiment: identifier and metadata of file
- CT: cycle threshold
- Well Position: well position in the 96-well plate
- Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
- Level: nutritional treatment, "High" for High P:C, "Equal" for Equal P:C, "Low" for Low P:C, "Qrtr" for Quarter caloric restriction diet, "Diss" for desiccation treatment.
- ReplicateB: biological replicate
- ReplicateT: technical replicate
File: AbioticStress-dataset-hatching-temperature.csv
Description: Describes the frequency of hatching events in a sample of embryos whose parents were exposed to thermal treatments during adulthood
Variables
- treatment: value "t" indicates temperature treatments
- stage: indicates the life stage of exposure, "1d" = development, "2a" = adult, "3e" = embryo
- level: treatment level ID with joint temperature and "C" for degree Celsius
- temp: treatment temperature
- cross: identifier variable for control "c" or experimental "X" sample
- replicate: indicates the replicate number of the sample, "1", "2" and "3" were used for analysis, samples with value "0" were considered burnout samples and were not included in the analysis
- block: indicates the block number that the sample belongs, variable used for modeling random effects
- total: total number of embryos in the sample
- hatch: number of embryos hatched
- hrate: hatching rate calculated as "hrate = hatch / total"
- cohort: indicates the experimental replicate, that is cohort "1" for the first replicate, etc.
File: TransgenicExpression-dataset-temperature-adult.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos whose parents were exposed to thermal treatments during adulthood
Variables
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Experiment: identifier and metadata of file
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CT: cycle threshold
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Well Position: well position in the 96-well plate
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Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
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Level: treatment temperature, either 19, 22, 25, 28, or 31 degrees Celsius
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ReplicateB: biological replicate
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ReplicateT: technical replicate
NOTE: Missing data for tTA reading (rows 170-178), interestingly the same biological samples indeed provided information on the other qPCR targets. We interpret this as "undetected".
File: TransgenicExpression-dataset-nutrition-development.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos whose mothers were exposed to nutritional treatments during development
Variables
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Experiment: identifier and metadata of file
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CT: cycle threshold
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Well Position: well position in the 96-well plate
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Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
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Level: nutritional treatment, "High" for High P:C, "Equal" for Equal P:C, "Low" for Low P:C, "Quarter" for Quarter caloric restriction diet
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ReplicateB: biological replicate
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ReplicateT: technical replicate
NOTE: Biological and technical replicates (3x) from rows 11, 12, 13, 23, 24, 25, 59, 60, 61, 71, 72, 73, 107, 108, 109, 119, 120, 121 were removed from dataset for quality reasons. Their impact in the experimental design was the reduction of one biological replicate per treatment, leaving at least 3 biological replicates with 3 technical replicates each.
File: TransgenicExpression-dataset-temperature-devo.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos whose mothers were exposed to thermal treatments during development
Variables
- Experiment: identifier and metadata of file
- CT: cycle threshold
- Well Position: well position in the 96-well plate
- Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
- Level: treatment temperature, either 19, 22, 25, or 28 degrees Celsius
- ReplicateB: biological replicate
- ReplicateT: technical replicate
File: TransgenicExpression-dataset-temperature-embryo.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos exposed to thermal treatments
Variables
- Experiment: identifier and metadata of file
- CT: cycle threshold
- Well Position: well position in the 96-well plate
- Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
- Level: treatment temperature, either 16,19, 22, 25, 28 or 31 degrees Celsius
- ReplicateB: biological replicate
- ReplicateT: technical replicate
File: TransgenicExpression-dataset-temperature-shock.csv
Description: Describes the cycle threshold (CT) values of quantitative PCR experiments in embryos whose parent were exposed to thermal shock
Variables
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Experiment: identifier and metadata of file
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CT: cycle threshold
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Well Position: well position in the 96-well plate
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Gene: target gene, reference = "RP49", effector = "HIDA5", driver = "TTA"
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Level: treatment level, "Cold" = cold shock, "No" = control, "Heat" = heat shock
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Time: (only shock file) - hours after shock
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ReplicateB: biological replicate
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ReplicateT: technical replicate
NOTE: Biological replicate from rows 170, 171, 172 were removed from dataset for quality reasons
