Data from: Elucidating a morphological and taxonomic continuum in Pappophorum (Poaceae: Chloridoideae)
Data files
Jan 15, 2026 version files 4.92 KB
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Couceiro_et_al._2026_Pappophorum_specimens.zip
2.90 KB
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README.md
2.02 KB
Abstract
Pappophorum Schreb. is a genus of perennial grasses included in Chloridoideae, found in arid and semiarid grasslands of the Americas. The genus is monophyletic, a sister group to Tridens Roem. & Schult., and the clade formed by these two is sister to Neesiochloa Pilg. Some taxonomic treatments in Pappophorum have repositioned taxa and indicated synonymizations based on morphological attributes. One of the classic examples of delimitation proposals in the genus concerns the morphological boundaries between P. subbulbosum and P. mucronulatum in the Southern Hemisphere, as well as between P. vaginatum in the Northern Hemisphere. This complex species serves as a valuable biological model, demonstrating that comparing delimitation proposals with phenotypic data can be sufficient for discussing and clarifying taxonomic issues. In this study, we tested species circumscription proposals as taxonomic hypotheses using a statistical framework that assesses the possibility of classifying all variation in the samples as a single species. This statistical routine integrates univariate, multivariate, simple Bayesian classification, and morphological classification models to answer: (i) what is the diagnostic potential of morphological characters between taxa; (ii) which classification proposal better accommodates the morphological variation of the species; and (iii) what level of morphological overlap can exist in recently diverged groups. The MCluster analysis indicated that the unsupervised classification of three species was the best taxonomic model. Six characters were statistically significant for distinguishing at least one species in the complex. Our results indicate that P. subbulbosum should be recognized as an accepted species, warranting its reinstatement and suggesting complementary descriptions for P. mucronulatum and P. vaginatum.
1. Overview
This repository contains the morphological dataset used in the manuscript:
Elucidating a morphological and taxonomic continuum in Pappophorum (Poaceae: Chloridoideae).
The dataset includes continuous and categorical characters collected from the herbarium and digitized specimens of Pappophorum species. The matrix supports all statistical analyses performed in the study.
2. File Description
1. Couceiro_et_al._2026_Pappophorum_specimens.zip
CSV file containing supp_matrix_metadata_YC.csv and supp_matrix_legend_YC.csv:
- Morphological characters measured for all specimens.
- Continuous variables (e.g., awn length, lemma measurements).
- Categorical variables (e.g., panicle type, presence/absence of glands).
- Specimen metadata (collector, character values).
- NA-coded values for non-evaluated characters.
- Commas are used as a decimal delimiter.
2. README.md
This document, describing dataset structure, coding, and metadata.
3. Data Structure and Coding
Specimen Identification
Each row corresponds to a unique specimen.
Fields include:
- Species name (sp)
- Collector (col)
- Character and codes (char01, char02...)
Morphological Characters
Characters follow the coding described in Supplemental Table S1 of the manuscript.
- Continuous characters: numeric measurements (mm/cm)
- Categorical characters: integers representing discrete states
Example:
Char13 (Panicle type)- 1 = sub-spiciform
- 2 = lax
- 3 = spiciform
Missing Data
NAindicates characters that could not be evaluated in the specimen.
4. Methodological Notes
- Data were used for PCA, species delimitation analyses (Mcluster and Naive Bayes classification), and morphological comparisons (Bray-Curtis distance matrix, Pearson chi-square test, and Kruskal-Wallis analysis).
