Changing food availability and its effect on the heritability of offspring size in woodland passerine birds
Data files
Dec 12, 2025 version files 2.64 MB
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GT_Data_Morfo.csv
569.66 KB
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GT_pedigree_20.csv
640.11 KB
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README.md
5.86 KB
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scrip_WT.R
35.90 KB
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script_GT.R
36.35 KB
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WT_Data_Morfo.csv
826.82 KB
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WT_pedigree_20.csv
527.18 KB
Abstract
Climate warming has been associated with widespread body size declines in many vertebrate taxa, but relatively little is known about possible climate warming induced shifts in trait heritabilities. The main goal of the study was to investigate how changing food availability affects evolutionary potential of four traits related to nestlings’ body size. We used long-term, pedigree structured data of two woodland passerines living in the boreal zone, the Willow Tit (Poecile montanus) and the Great Tit (Parus major), to study how food availability for their nestlings has changed in time, how this has influenced their morphological traits (viz. wing, tail & tarsus length & body mass) and their heritabilities and evolvabilities. This was done by assessing heritabilities under varying food availabilities using random regression animal models. We found that caterpillar food availability had increased over the 25 years long study period and that this was accompanied by increases of nestlings’ body mass, but not other morphological traits. All traits were heritable in both species, but additive genetic variance, heritability and evolvability were affected by food availability only in the case of the wing length, being higher under low food availability (the Great Tit) or higher under low and high food availability (the Willow Tit). We conclude that changes in food availability seem to have limited influence on evolutionary potential of body size traits in these two passerine birds.
Dataset DOI: 10.5061/dryad.xpnvx0kvh
Description of the data and file structure
Paper associated with this archive
Citation: Vatka, Emma; Orell, Markku; Rytkönen, Seppo; Merilä, Juha (2025) Changing food availability and its effect on the heritability of offspring size in woodland passerine birds. Journal of Animal Ecology.
Dates of data collection: Years 1996-2020
Geographic location of data collection: Oulu, Finland (N 65°05’, E 25°33’)
Data and code file overview
Data on morphological measures of Willow Tit (Poecile montanus) and Great Tit (Parus major) nestlings were collected with standard methods during years 1996–2020 for which also food availability data was available. Nestlings were measured at the age of two weeks (13 days or 14 days old for the Willow Tit and the Great Tit, respectively; 0 = hatching date of the oldest young). Wing length and tail length were measured using a ruler to nearest mm. Tarsus length was measured using a vernier calliper to nearest 0.01 mm, and body mass with either a Pesola spring balance or digital scales to nearest 0.1 g.
Data on caterpillar food availability during nestling periods was collected with the frass-fall method for years 1996–2020. Biomasses of caterpillars (g/m2) living in canopies of birch (Betula spp.) were estimated in weekly periods. We assumed that the weekly caterpillar biomass estimate reflects daily caterpillar abundances during the frass-fall collection period. We then calculated brood-specific average caterpillar food availabilities per day during nestling periods (from the hatching date until the date of nestlings’ measurement). The unit for food availability is g/m2/day.
Pedigree files are constructed for animal model analyses with package MCMCglmm in R.
Files and variables
File: GT_pedigree_20.csv
Description: Pedigree of individually marked Great Tits in Oulu study area (data until 2020)
Variables
- animal: identity of the bird individual
- dam: identity of the mother of the individual. 'NA' for missing information.
- sire: identity of the father of the individual. 'NA' for missing information.
File: WT_Data_Morfo.csv
Description: Morphological measures and food availabilities for individual nestlings of Willow Tits in Oulu, Finland
Variables
- animal: identity of the nestling bird. Variable is used in animal models to link the data with the pedigree information.
- BroodID: identity of the brood of the nestling. Variable is used to model shared environmental conditions experienced by nestlings of same broods.
- Vuosi: year
- Mittaaja: identity of the measurer (encrypted).
- Pa: body mass (g)
- Si: wing length (mm)
- Py: tail length (mm)
- Ni: tarsus length (mm)
- Ruoka: average caterpillar food availability during the nestling period (g/m2/day)
- F.ID: female identity
- M.ID: male identity
File: WT_pedigree_20.csv
Description: Pedigree of individually marked Willow Tits in Oulu study area (data until 2020)
Variables
- animal: identity of the bird individual
- dam: identity of the mother of the individual. 'NA' for missing information.
- sire: identity of the father of the individual. 'NA' for missing information.
File: scrip_WT.R
Description: The script attached was used to produce the results regarding the Willow Tit in manuscript titled "Changing food availability and its effect on the heritability of offspring size in woodland passerine birds" using program R (it is ready to use in the R-script for the statistical analyses). The script includes the following analyses:
- Testing for a temporal trend in food availability
- Effects of food availability on nestlings body size traits
- Effect of food availability on brood size
- Temporal trends in nestlings' body size traits
- Random regression animal model analyses
- Evolvability and CVe calculations
File: script_GT.R
Description: The script attached was used to produce the results regarding the Great Tit in manuscript titled "Changing food availability and its effect on the heritability of offspring size in woodland passerine birds" using program R (it is ready to use in the R-script for the statistical analyses). The script includes the following analyses:
- Testing for a temporal trend in food availability
- Effects of food availability on nestlings body size traits
- Effect of food availability on brood size
- Temporal trends in nestlings' body size traits
- Random regression animal model analyses
- Evolvability and CVe calculations
File: GT_Data_Morfo.csv
Description: Morphological measures and food availabilities for individual nestlings of Great Tits in Oulu, Finland
Variables
- animal: identity of the nestling bird. Variable is used in animal models to link the data with the pedigree information.
- BroodID: identity of the brood of the nestling. Variable is used to model shared environmental conditions experienced by nestlings of same broods.
- Vuosi: year
- Ruoka: average caterpillar food availability during the nestling period (g/m2/day)
- Mittaaja: identity of the measurer (encrypted).
- Si: wing length (mm)
- Py: tail length (mm)
- Ni: tarsus length (mm)
- Pa: body mass (g)
- F.ID: female identity
- M.ID: male identity
Code/software
Code scripts and workflow:
The scripts attached were used to produce the results in manuscript titled "Changing food availability and its effect on the heritability of offspring size in woodland passerine birds" using program R.
Software version:
R, version 4.3.1
R libraries:
lme4, version 1.1-35.1
MCMCglmm, version 2.35
arules, version 1.7-8
pedigree, version 1.4.2
coda, version 0.19-4
