LiDAR-derived tree architecture data of geo-located tropical trees in Luquillo experimental forest, Puerto Rico
Data files
May 28, 2025 version files 48.32 KB
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Ankori_Karlinsky_NewPhytologist_TreeArchitecture.csv
41.79 KB
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README.md
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Abstract
Tree architecture is an important component of forest community dynamics – taller trees with larger crowns often outcompete their neighbors, but they are generally at higher risk of wind-induced damage. Yet we know little about wind impacts on tree architecture in natural forest settings, especially in complex tropical forests. Here we use airborne LiDAR from NASA’s Goddard’s LiDAR, Hyperspectral and Thermal (G-LiHT) Airborne Image March 2017 flights over Puerto Rico and 30 years of forest inventory data in Puerto Rico to ask whether and how chronic winds alter tree architecture.
We randomly sampled 124 geo-located canopy individuals of four dominant tree species. For each individual, we measured slenderness (height/stem diameter) and crown area (m2) and evaluated whether exposure to chronic winds impacted architecture after accounting for topography (curvature, elevation, slope, soil wetness) and neighborhood variables (crowding and previous hurricane damage). We then estimated the mechanical wind-vulnerability of trees.
Introduction
This dataset was used for analyses and figures in Ankori-Karlinsky et al., 2025 in New Phytologist.
The main question of this paper is whether exposure to chronic winds reduces individual trees' vulnerability of stem-break within species.
In order to evaluate this question, we use airborne LiDAR-derived crown metrics from 124 geo-located trees in the 16ha Luquillo Forest Dynamics Plots (LFDP) in the Luquillo Experimental Forest (LEF) in El Yunque National Forest, Puerto Rico.
The LiDAR data come from geo-located 35cm resolution G-LiHT (https://gliht.gsfc.nasa.gov/) LiDAR point-clouds taken in 2017 (before Hurricane Maria) over the LEF at 12 pulses/m2 density.
We focus on 4 abundant (~40% of forest basal area) species that differ in life-span and wind-resistant life-history traits:
- Buchenavia tetraphylla (~40-50 year lifespan, intermediate hurricane resistance)
- Cecropia schreberiana (~20-40 year lifespan, low hurricane resistance)
- Dacryodes excelsa (~400 year lifespan, high hurricane resistance)
- Manilkara bidentata (~400 year lifespan, high hurricane resistance)
To understand how chronic wind-induced architectural imprints may impact a tree’s vulnerability to storms, we calculated mechanical wind vulnerability for each individual tree i of species s ($rs_{is}$) at storm speeds (e.g., 25 m/s) based on the GALES wind vul model from Gardiner et al., (2000) and based on Jackson et al., (2021):
$$vul_{is} \sim \frac{H_{is}}{dbh_{is}^{3}} ⋅\frac{A_{is}}{\rho_{s}} $$
where H is the vertical height of the tree in m, dbh is the diameter of the stem in cm at 1.3 m Height, A is the surface area of the crown in m${2}$, and $\rho$ is species-level wood weight to volume in $\frac{kg}{cm{3}}$ from Swenson et al., (2012)
We therefore estimate how chronic wind-exposure (exposure to NE-SE trade winds) may reduce wind vulnerability by leading to either shorter trees, wider stems, or reducing crown area.
We also explores how a number of other covariates may influence tree architecture and therefore, vulnerability:
- Topography - wetness index, elevation, slope, curvature within a radius of 20 m$^{2}$
- Neighborhood Crowding using the crowding index from Uriarte et al., (2004) within a radius of 20 m$^{2}$
- Previous Neighborhood Hurricane Damage within a radius of 20 m$^{2}$
References
Gardiner, B., Peltola, H., & Kellomäki, S. (2000). Comparison of two models for predicting the critical wind speeds required to damage coniferous trees. Ecological Modelling, 129(1), 1–23. https://doi.org/10.1016/S0304-3800(00)00220-9
Jackson, T., Shenkin, A. F., Majalap, N., Jami, J. B., Sailim, A. B., Reynolds, G., Coomes, D. A., Chandler, C. J., Boyd, D. S., Burt, A., Wilkes, P., Disney, M., & Malhi, Y. (2021). The mechanical stability of the world’s tallest broadleaf trees. Biotropica, 53(1), 110–120. https://doi.org/10.1111/btp.12850
Swenson, N. G., Stegen, J. C., Davies, S. J., Erickson, D. L., Forero-Montaña, J., Hurlbert, A. H., Kress, W. J., Thompson, J., Uriarte, M., Wright, S. J., & Zimmerman, J. K. (2012). Temporal turnover in the composition of tropical tree communities: Functional determinism and phylogenetic stochasticity. Ecology, 93(3), 490–499. https://doi.org/10.1890/11-1180.1
Uriarte, M., Canham, C. D., Thompson, J., & Zimmerman, J. K. (2004). A Neighborhood Analysis of Tree Growth and Survival in a Hurricane-Driven Tropical Forest. Ecological Monographs, 74(4), 591–614. https://doi.org/10.1890/03-4031
Metadata
Each row is one individual tree stem.
Below is information on each column:
UniqueID: Tag number of tree in the Luquillo Forest Dynamics Plot (LFDP)
Species: Species 6-letter abbreviation
Quadrat: 20m² quadrat number
Q5: 5m² quadrat number
X: Relative x coordinate of tree stem
Y: Relative y coordinate of tree stem
DBH: Diameter at 1.3m height in cm
Elev_20m: Average elevation in m in 20m radius around tree stem
Slope_20m: Average topographic slope in degrees in 20m radius around tree stem
Curve_20m: Average topographic curvature in 20m radius around tree stem
TWI_20m: Average topographic wetness index in 20m radius around tree stem
NCI_2000_20m: Average crowding index in 20m radius around tree stem from 2000 census
Wind_Binary: Chronic wind exposure (protected or exposed)
Wood_Density: Mean species-level wood specific gravity according to Swenson et al. 2012 (kg/m³)
SLA: Mean species-level specific leaf area according to Swenson et al. 2012
Hugo_damage: Proportion severely damaged trees from Hurricane Hugo in 1989 in 20m radius around tree stem
Height: Maximum height of tree crown from ALS data in m
Crown_Volume: Volume of tree crown from ALS data in m³
Crown_area: Area of tree crown from ALS data in m²
Mean_aspect: Average direction of tree crown from ALS data in degrees
AGR_all: Absolute growth rate of tree from 2016 census to earliest census observed
Slenderness: Height/DBH
DBH3: DBH to the third power to model cantilever beam
Wind_Vul: Mechanical vulnerability of wind-induced stem-break calculated according to Gardiner et al. 2000 GALES model
Comment: Comment in Geo7x handheld Trimble device indicating direction of measurement relative to the location of the tree stem
Corr_Type: Correction type (if any) used by Pathfinder software from Trimble
Rcvr_Type: Recovery type of information
GPS_Date: Date measurement was taken
GPS_Time: Time of day measurement was taken
Unfilt_Pos: Number of measurements (1 per second) taken before processing
Filt_Pos: Number of measurements (1 per second) taken after processing
GNSS_Heigh: Elevation above sea level measured in m
Vert_Prec: Vertical precision accuracy in m
Horz_Prec: Horizontal precision accuracy in m
Std_Dev: Standard deviation of precision accuracy
Northing: Northing coordinate (in UTM -20N Puerto Rico projection)
Easting: Easting coordinate (in UTM -20N Puerto Rico projection)
Sharing/access Information
Please cite Ankori-Karlinsky et al., 2025 in New Phytologist if you use these data.
