Show simple item record

dc.contributor.author Martiniano, Rui
dc.contributor.author Cassidy, Lara M.
dc.contributor.author Ó'Maoldúin, Ros
dc.contributor.author McLaughlin, Russell
dc.contributor.author Silva, Nuno M.
dc.contributor.author Manco, Licinio
dc.contributor.author Fidalgo, Daniel
dc.contributor.author Pereira, Tania
dc.contributor.author Coelho, Maria J.
dc.contributor.author Serra, Miguel
dc.contributor.author Burger, Joachim
dc.contributor.author Parreira, Rui
dc.contributor.author Moran, Elena
dc.contributor.author Valera, Antonio C.
dc.contributor.author Porfirio, Eduardo
dc.contributor.author Boaventura, Rui
dc.contributor.author Silva, Ana M.
dc.contributor.author Bradley, Daniel G.
dc.date.accessioned 2017-07-28T12:03:12Z
dc.date.available 2017-07-28T12:03:12Z
dc.date.issued 2017-07-27
dc.identifier doi:10.5061/dryad.g9f5r
dc.identifier.citation Martiniano R, Cassidy LM, Ó'Maoldúin R, McLaughlin R, Silva NM, Manco L, Fidalgo D, Pereira T, Coelho MJ, Serra M, Burger J, Parreira R, Moran E, Valera AC, Porfirio E, Boaventura R, Silva AM, Bradley DG (2017) The population genomics of archaeological transition in west Iberia: investigation of ancient substructure using imputation and haplotype-based methods. PLOS Genetics 13(7): e1006852.
dc.identifier.issn 1553-7390
dc.identifier.uri http://hdl.handle.net/10255/dryad.147897
dc.description We analyse new genomic data (0.05–2.95x) from 14 ancient individuals from Portugal distributed from the Middle Neolithic (4200–3500 BC) to the Middle Bronze Age (1740–1430 BC) and impute genomewide diploid genotypes in these together with published ancient Eurasians. While discontinuity is evident in the transition to agriculture across the region, sensitive haplotype-based analyses suggest a significant degree of local hunter-gatherer contribution to later Iberian Neolithic populations. A more subtle genetic influx is also apparent in the Bronze Age, detectable from analyses including haplotype sharing with both ancient and modern genomes, D-statistics and Y-chromosome lineages. However, the limited nature of this introgression contrasts with the major Steppe migration turnovers within third Millennium northern Europe and echoes the survival of non-Indo-European language in Iberia. Changes in genomic estimates of individual height across Europe are also associated with these major cultural transitions, and ancestral components continue to correlate with modern differences in stature.
dc.relation.haspart doi:10.5061/dryad.g9f5r/1
dc.relation.haspart doi:10.5061/dryad.g9f5r/2
dc.relation.haspart doi:10.5061/dryad.g9f5r/3
dc.relation.isreferencedby doi:10.1371/journal.pgen.1006852
dc.subject Paleogenetics
dc.subject Ancient DNA
dc.subject Haplotypes
dc.subject Genome Sequencing
dc.subject Population Structure
dc.subject Selection
dc.title Data from: The population genomics of archaeological transition in west Iberia: investigation of ancient substructure using imputation and haplotype-based methods
dc.type Article
dc.contributor.correspondingAuthor Bradley, Daniel G
prism.publicationName PLOS Genetics

Files in this package

Content in the Dryad Digital Repository is offered "as is." By downloading files, you agree to the Dryad Terms of Service. To the extent possible under law, the authors have waived all copyright and related or neighboring rights to this data. CC0 (opens a new window) Open Data (opens a new window)

Title Index for VCF file
Downloaded 48 times
Description Index for VCF file
Download post_imputation_Martiniano_et_al_2017_pub...gz.tbi (2.240 Mb)
Details View File Details
Title VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples.
Downloaded 39 times
Description VCF file containing imputed genotype data belonging to 67 newly sequenced and publicly available ancient samples which we analysed in Martiniano et al. (2017).
Download post_imputation_Martiniano_et_al_2017_publ...cf.gz (1.984 Gb)
Details View File Details
Title README_Martiniano_et_al_2017
Downloaded 40 times
Description Description of the methods used for genotype imputation.
Download README_Martiniano_et_al_2017.txt (4.465 Kb)
Details View File Details

Search for data

Be part of Dryad

We encourage organizations to: