Data from: Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae)

Heyduk K, McKain MR, Lalani F, Leebens-Mack J

Date Published: September 12, 2016

DOI: http://dx.doi.org/10.5061/dryad.00fs2

 

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Title CrossSectionMeasurements
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Description Cross section data generated from leaf cross sections, imaged using a Zeiss microscope and analyzed in ImageJ.
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Title Gene trees
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Description Gene trees produced from 272 single copy genes, using RAxML. Trees are the consensus of 500 bootstrap replicates (RAxML_bipartitions.*).
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Title Gene alignments
Downloaded 121 times
Description Nucleotide alignments of 272 single copy genes.
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Title Chloroplast tree
Downloaded 22 times
Description RAxML bipartition tree from chloroplast alignment. 500 bootstrap replicates.
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Title Chloroplast alignment
Downloaded 1 time
Description Chloroplast alignment file.
Download all.merged.fa.align-gb.68 (4.720 Mb)
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Title Concatenated nuclear tree
Downloaded 3 times
Description RAxML bipartition (bootstraps=500) tree for the concatenated nuclear data.
Download concatenated_nuclear_RAxML.tre (3.681 Kb)
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Title Nuclear ASTRALII tree
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Description ASTRAL-II species tree, based on 272 single copy gene trees. 400 bootstrap replicates.
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When using this data, please cite the original publication:

Heyduk K, McKain MR, Lalani F, Leebens-Mack J (2016) Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae). Molecular Phylogenetics and Evolution 105: 102-113. http://dx.doi.org/10.1016/j.ympev.2016.08.018

Additionally, please cite the Dryad data package:

Heyduk K, McKain MR, Lalani F, Leebens-Mack J (2016) Data from: Evolution of a CAM anatomy predates the origins of Crassulacean acid metabolism in the Agavoideae (Asparagaceae). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.00fs2
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