Data from: Characterization of a male reproductive transcriptome for Peromyscus eremicus (Cactus mouse)

Kordonowy LL, MacManes MD

Date Published: October 27, 2016

DOI: http://dx.doi.org/10.5061/dryad.01c3t

 

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Title annotated reproductive transcriptome
Downloaded 7 times
Description Annotated male Peromyscus eremicus reproductive tissue transcriptome (assembled from testes, epididymis, and vas deferens reads).
Download reproductive.annotated.fasta (132.6 Mb)
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Title 42SeqsM2aPosSel
Downloaded 4 times
Description BLASTn results for 42 orthogroups under positive selection in P. eremicus (selection results were generated by PAML M2a analysis).
Download 42SeqsM2aPosSel.txt (91.45 Kb)
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Title PAMLresults
Downloaded 4 times
Description Adjusted p-values for all orthogroup comparisons using null vs. alternative model evaluations with P. eremicus in as the foreground lineage (selection results were generated by PAML M2a analysis)
Download PAMLresults.txt (362.1 Kb)
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Title significant orthogroups
Downloaded 2 times
Description The statistically significant p-values for the 42 orthogroups under positive selection in P. eremicus (selection results were generated by PAML M2a analysis)
Download significant_orthogroups.txt (6.212 Kb)
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Title transdecoder.gff3
Downloaded 3 times
Description Transdecoder .gff3 format output file for predicted protein coding regions for annotated transcriptome.
Download transdecoder.gff3 (51.30 Mb)
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Title transdecoder.pep
Downloaded 3 times
Description Transdecoder .pep format output file for predicted protein coding regions for annotated transcriptome.
Download transdecoder.pep (28.08 Mb)
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Title transdecoder.cds
Downloaded 4 times
Description Transdecoder .cds format output file for predicted protein coding regions for annotated transcriptome.
Download transdecoder.cds (64.94 Mb)
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Title transdecoder.bed
Downloaded 3 times
Description Transdecoder .bed format output file for predicted protein coding regions for annotated transcriptome.
Download transdecoder.bed (10.78 Mb)
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Title transdecoder.mRNA
Downloaded 4 times
Description Transdecoder .mRNA format output file for predicted protein coding regions for annotated transcriptome.
Download transdecoder.mRNA (180.7 Mb)
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Title reproductive pfam
Downloaded 4 times
Description Pfam database matches annotation file for transcriptome (generated by dammit).
Download reproductive.pfam.gff3 (33.06 Mb)
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Title reproductive rfam
Downloaded 3 times
Description Rfam database matches annotation file for transcriptome (generated by dammit).
Download reproductive.rfam.gff3 (195.2 Kb)
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Title reproductive dammit
Downloaded 2 times
Description Complete annotation file for transcriptome, which includes annotations from all five searched databases generated by dammit.
Download reproductive.dammit.gff3 (103.2 Mb)
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Title reproductive uniref
Downloaded 7 times
Description UniRef90 database matches annotation file for transcriptome (generated by dammit).
Download reproductive.uniref.gff3 (9.973 Mb)
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Title epi.tpm.plus.ncRNA
Downloaded 11 times
Description Epididymis matches to the ncRNA Database.
Download epi.tpm.plus.ncRNA.txt (4.328 Mb)
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Title vas.tpm.plus.ncRNA
Downloaded 9 times
Description Vas deferens matches to the ncRNA Database.
Download vas.tpm.plus.ncRNA.txt (4.326 Mb)
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Title testes.tpm.plus.ncRNA
Downloaded 4 times
Description Testes matches to the ncRNA Database.
Download testes.tpm.plus.ncRNA.txt (4.328 Mb)
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Title epi.tpm.plus.tcdb
Downloaded 5 times
Description Epididymis matches to the Transporter Classification Database.
Download epi.tpm.plus.tcdb.txt (946.9 Kb)
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Title testes.tpm.plus.tcdb
Downloaded 5 times
Description Testes matches to the Transporter Classification Database.
Download testes.tpm.plus.tcdb.txt (947.0 Kb)
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Title vas.tpm.plus.tcdb
Downloaded 5 times
Description Vas deferens matches to the Transporter Classification Database.
Download vas.tpm.plus.tcdb.txt (945.9 Kb)
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Title kallisto epi
Downloaded 3 times
Description Kallisto generated counts of expression for epididymis reads mapped to the annotated reproductive transcriptome.
Download kallisto.epi.tsv (3.380 Mb)
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Title kallisto testes
Downloaded 1 time
Description Kallisto generated counts of expression for testes reads mapped to the annotated reproductive transcriptome.
Download kallisto.testes.tsv (3.387 Mb)
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Title kallisto vas
Downloaded 3 times
Description Kallisto generated counts of expression for vas deferens reads mapped to the annotated reproductive transcriptome.
Download kallisto.vas.tsv (3.373 Mb)
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When using this data, please cite the original publication:

Kordonowy LL, MacManes MD (2016) Characterization of a male reproductive transcriptome for Peromyscus eremicus (Cactus mouse). PeerJ 2: e2617. http://dx.doi.org/10.7717/peerj.642

Additionally, please cite the Dryad data package:

Kordonowy LL, MacManes MD (2014) Data from: Characterization of a male reproductive transcriptome for Peromyscus eremicus (Cactus mouse). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.01c3t
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