Data from: Two widespread green Neottia species (Orchidaceae) show mycorrhizal preference for Sebacinales in various habitats and ontogenetic stages

Těšitelová T, Kotilínek M, Jersáková J, Joly F, Košnar J, Tatarenko I, Selosse M

Date Published: January 22, 2015

DOI: http://dx.doi.org/10.5061/dryad.033ds

 

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Title Neottia_18S+ITS+trnL(UAA)intron_alignment
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Description Combined alignment of 18S, ITS, and trnL(UAA) intron of five Neottia species used for infering phylogeny under a partitioned model. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Neottia_18S+ITS+trnL(UAA)intron_tree
Downloaded 5 times
Description Bayesian phylogenetic tree of the Neottia genus based on a concatenation of ITS, 18S, and trnL(UAA) intron, with photosynthetic N. ovata, N. cordata, and N. smallii, putatively photosynthetic and likely partially mycoheterotrophic N. camtschatea, and non-photosynthetic mycoheterotrophic N. nidus-avis in adulthood. The tree is in the newick format.
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Title Neottia_18S_alignment
Downloaded 4 times
Description Alignment of 18S of Neottia species produced by MAFFT and used for infering phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Neottia_18S_tree
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Description Bayesian majority-rule consensus trees based on 18S of several Neottia species. The tree is in newick format.
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Title Neottia_ITS_alignment
Downloaded 6 times
Description Alignment of ITS sequences of several Neottieae species produced by MAFFT and used for infering Neottia phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Neottia_ITS_tree
Downloaded 3 times
Description Bayesian majority-rule consensus tree based on ITS. The tree is in newick format.
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Title Neottia_trnL(UAA)intron_alignment
Downloaded 4 times
Description Alignment of trnL(UAA) intron sequences of several Neottieae species produced by MAFFT and used for infering Neottia phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Neottia_trnL(UAA)intron_tree
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Description Bayesian majority-rule consensus tree based on trnL(UAA) intron. The tree is in newick format.
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Title Sebacinales_28S_alignment
Downloaded 5 times
Description Alignment of 28S sequences of Sebacinales produced by MAFFT and used for infering Sebacinales phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Sebacinales_28S_tree
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Description Bayesian majority-rule consensus tree of Sebacinales based on part of 28S. The tree is in newick format.
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Title Tulasnellaceae5.8S+28S_alignment
Downloaded 4 times
Description Alignment of 5.8S and short part of 28S sequences of Tulasnellaceae species produced by MAFFT and used for infering phylogeny. This file is in nexus format and contains sequence alignment and MrBayes input data.
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Title Tulasnellaceae5.8S+28S_tree
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Description Bayesian majority-rule consensus tree of Tulasnellaceae based on 5.8S and short part of 28S. The tree is in newick format.
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Title Stable_Isotopes
Downloaded 40 times
Description δ15N, δ13C, and N concentration values for plants and fungi from four sites.
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When using this data, please cite the original publication:

Těšitelová T, Kotilínek M, Jersáková J, Joly F, Košnar J, Tatarenko I, Selosse M (2015) Two widespread green Neottia species (Orchidaceae) show mycorrhizal preference for Sebacinales in various habitats and ontogenetic stages. Molecular Ecology 24(5): 1122-1134. http://dx.doi.org/10.1111/mec.13088

Additionally, please cite the Dryad data package:

Těšitelová T, Kotilínek M, Jersáková J, Joly F, Košnar J, Tatarenko I, Selosse M (2015) Data from: Two widespread green Neottia species (Orchidaceae) show mycorrhizal preference for Sebacinales in various habitats and ontogenetic stages. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.033ds
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