Data from: Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event

Schneider K, Resl P, Spribille T

Date Published: April 4, 2016

DOI: http://dx.doi.org/10.5061/dryad.03692

 

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Title alignment_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 10 times
Description DNA sequence alignment (in FASTA format) used for construction of phylogenetic trees. Includes data of four non-coding loci, namely the internal transcribed spacer region (ITS), which consists of two parts and includes the strongly conserved 5.8S rRNA region, the nuclear small ribosomal subunit gene (SSU), the nuclear large ribosomal subunit gene (LSU), and the mitochondrial small ribosomal subunit gene (mtSSU), and four protein-coding genes, namely DNA-directed RNA polymerase II subunit RPB1 (RPB1), DNA-directed RNA polymerase II subunit RPB2 (RPB2), DNA replication licensing factor MCM7 (MCM7), and translation elongation factor 1 alpha (EF1a).
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Title RAxML_MLtree_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 11 times
Description A phylogenetic tree in Newick format constructed using RAxML 7.4.2 based on the alignment included in this data package.
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Title MrBayes_allcompat_consensus_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 5 times
Description A consensus phylogenetic tree in Nexus format constructed using MrBayes 3.2.1 based on the alignment included in this data package.
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Title BEAST_MCC_run1_Schneider_et_al_2016_MolEcol_Dryad
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Description A maximum clade credibility (MCC) phylogenetic tree in Nexus format constructed using BEAST 1.8.1 based on the alignment included in this data package.
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Title BEAST_MCC_run2_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 5 times
Description A maximum clade credibility (MCC) phylogenetic tree in Nexus format constructed using BEAST 1.8.1 based on the alignment included in this data package.
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Title StarBEAST_MCC_run1_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 3 times
Description A maximum clade credibility (MCC) phylogenetic species tree in Nexus format constructed using *BEAST 1.8.1 based on the alignment included in this data package.
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Title StarBEAST_MCC_run2_Schneider_et_al_2016_MolEcol_Dryad
Downloaded 3 times
Description A maximum clade credibility (MCC) phylogenetic species tree in Nexus format constructed using *BEAST 1.8.1 based on the alignment included in this data package.
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When using this data, please cite the original publication:

Schneider K, Resl P, Spribille T (2016) Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event. Molecular Ecology 25(14): 3453–3468. http://dx.doi.org/10.1111/mec.13636

Additionally, please cite the Dryad data package:

Schneider K, Resl P, Spribille T (2016) Data from: Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.03692
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