Data from: Assessing species boundaries and the phylogenetic position of the rare Szechwan Ratsnake, Euprepiophis perlacea (Serpentes: Colubridae), using coalescent-based methods

 

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Title Perlaceaspeciestree
Downloaded 30 times
Description xml for inferring specie tree in *BEAST using one mitochondria gene and three nuclear genes
Download Perlaceaspeciestree.xml (247.5 Kb)
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Title perlspeciestree_nuclearonly
Downloaded 12 times
Description xml for inferring specie tree in *BEAST using three nuclear genes
Download perlspeciestree_nuclearonly.xml (187.4 Kb)
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Title model1_1
Downloaded 23 times
Description xml file for running species tree in *BEAST based on model 1 (assuming Euprepiophis perlacea and Euprepiophis manderinus are two independent species)
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Title model2_1
Downloaded 18 times
Description xml file for running species tree in *BEAST based on model 2 (assuming Euprepiophis perlacea and Euprepiophis manderinus are one species)
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Title m1_1pathSampling
Downloaded 18 times
Description xml file for calculating marginal likelihood of model 1 (Euprepiophis perlacea and Eupreophis manderinus are two species) using path-sampling estimator
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Title m1_1stepstone
Downloaded 13 times
Description xml file for calculating marginal likelihood of model 1 (Euprepiophis perlacea and Eupreophis manderinus are two species) using stepstone estimator
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Title m2_1pathSampling
Downloaded 17 times
Description xml file for calculating marginal likelihood of model 2 (Euprepiophis perlacea and Eupreophis manderinus are one species) using path-sampling estimator
Download m2_1pathSampling.xml (249 bytes)
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Title m2_1stepstone
Downloaded 18 times
Description xml file for calculating marginal likelihood of model 2 (Euprepiophis perlacea and Eupreophis manderinus are one species) using stepstone estimator
Download m2_1stepstone.xml (267 bytes)
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When using this data, please cite the original publication:

Chen X, Jiang K, Guo P, Huang S, Rao D, Ding L, Takeuchi H, Che J, Zhang Y, Myers EA, Burbrink FT (2013) Assessing species boundaries and the phylogenetic position of the rare Szechwan Ratsnake, Euprepiophis perlacea (Serpentes: Colubridae), using coalescent-based methods. Molecular Phylogenetics and Evolution 70: 130–136. http://dx.doi.org/10.1016/j.ympev.2013.09.003

Additionally, please cite the Dryad data package:

Chen X, Jiang K, Guo P, Huang S, Rao D, Ding L, Takeuchi H, Che J, Zhang Y, Myers EA, Burbrink FT (2013) Data from: Assessing species boundaries and the phylogenetic position of the rare Szechwan Ratsnake, Euprepiophis perlacea (Serpentes: Colubridae), using coalescent-based methods. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.053m3
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