Data from: Gene expression profiling in the hibernating primate, Cheirogaleus Medius

Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD

Date Published: December 8, 2016

DOI: http://dx.doi.org/10.5061/dryad.057b7

 

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Title Trinity assembly
Downloaded 2 times
Description Trinity assembly of filtered paired-end reads (phred score >30, both pairs passed QC control) pooling all samples.
Download Trinity.fasta.tar.gz (250.6 Mb)
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Title blastx table for all reconstructed transcripts
Downloaded 2 times
Description Blastx table against human for all reconstructed transcripts. Includes the perecentage of the human protein covered by the lemur transcript.
Download blastx.outfmt6.w_pct_hit_length.sorted.tar.gz (4.893 Mb)
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Title GTEx rpkm table
Downloaded 1 time
Description GTEX rpkm table for the 2 human adipose tissue samples analyzed: GTEX9N7MS903269SM94E3K2 and GTEX9NFK9903269SM93MJGV)
Download GTEx_Analysis_2014-01-17_RNA-seq_RNA-SeQCv...ar.gz (669.8 Mb)
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Title Table of counts at the gene level
Downloaded 3 times
Description Table of counts at the gene level generated with RSEM and used for calling Differentially exrpressed genes with EdgeR. Towhee samples removed.
Download gene.counts.matrix.sorted_towhee_out.tar.gz (4.865 Mb)
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When using this data, please cite the original publication:

Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD (2016) Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius. Genome Biology and Evolution 8(8): 2413-2426. http://dx.doi.org/10.1093/gbe/evw163

Additionally, please cite the Dryad data package:

Faherty SL, Villanueva-Cañas JL, Klopfer PH, Albà MM, Yoder AD (2016) Data from: Gene expression profiling in the hibernating primate, Cheirogaleus Medius. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.057b7
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