Data from: Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators

Sedeek KEM, Scopece G, Staedler YM, Schönenberger J, Cozzolino S, Schiestl FP, Schlüter PM

Date Published: November 6, 2014

DOI: http://dx.doi.org/10.5061/dryad.05db4

 

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Title Data-Crosses_2011-2012
Description Data from crossing experiments in the greenhouse (tab-delimited text), including capsule formation and numbers of seeds with embryo.
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Title Data-FlowCytometry_2011-2012
Description Data from flow cytometry or pollinia for estimation of ploidy level, tab-delimited text file.
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Title Data-FlowerReflectanceSpectraCor_300-700nm
Description Flower spectral reflectance measurements, one reading every nm (from 300 - 700 nm), for different flower parts. Tab-delimited text file.
Download Data-FlowerReflectanceSpectraCor_300-700nm.tsv (125.7 Kb)
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Title Data-GBS_Analysis-InputSourceFiles
Description ZIP archive containing genotype data from GBS experiments that can be used as input for downstream analysis. One file, GBS_data_INFO.txt describes the input in more detail. Briefly, the other data files are (1) a compressed Variant Call Format (VCF) file and (2) a STRUCTURE input file.
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Title Data-GC_2011-2012
Description Tab-delimited text file listing the amounts of different floral odour components, as determined by gas chromatography.
Download Data-GC_2011-2012.tsv (51.91 Kb)
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Title Data-microCT-landmarks_morphologika-format
Description Text file in Morphologika format, listing the coordinates for 17 geometric landmarks (as determined by micro-computed tomography) in the different flower samples.
Download Data-microCT-landmarks_morphologika-format.txt (19.55 Kb)
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Title Data-PhotoFlowerRGB
Description Measurements of Red, Green and Blue pixel values from standardised flower photographs, for different flower parts (tab-delimited text)
Download Data-PhotoFlowerRGB.tsv (16.13 Kb)
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Title Data-PhotoFlowerSize_cm
Description Measurements of different flower parts (in cm) from photographs.
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Title Data-PhotosFlowerLabellum_BW
Description ZIP-Archive containing black-and-white JPEG images of flower labella, showing the shape of the speculum (in white) within the labellum. The first letter of the file name indicates species; E: O. exaltata; G: O. garganica; I: O. incubacea; S: O. sphegodes. These files constitute the input data for analysis of speculum shape.
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Title data-phenology_S5
Description Tab delimited text file for data in Table S5, listing the number of open flowers per date (in DD.MM.YYYY format).
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Title Data-Pollinator_plot_experiments_S7
Description Tab-delimited text file for data in Table S7, giving values for the pollen-tracking experiment in two populations.
Download data-pollinator_plot_experiments_S7.tsv (1.009 Kb)
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Title Data-GBS_SRA_accessions
Description Table in tab-delimited text format that lists the NCBI sequence read archive (SRA) accession numbers corresponding to the plant individuals listed in Table S4. It lists plant sample name and accession, species and population, as well as SRA Experiment, Run and Sample accession numbers.
Download data-GBS_SRA_accessions.tsv (7.416 Kb)
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When using this data, please cite the original publication:

Sedeek KEM, Scopece G, Staedler YM, Schönenberger J, Cozzolino S, Schiestl FP, Schlüter PM (2014) Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators. Molecular Ecology 23(24): 6192-6205. http://dx.doi.org/10.1111/mec.12992

Additionally, please cite the Dryad data package:

Sedeek KEM, Scopece G, Staedler YM, Schönenberger J, Cozzolino S, Schiestl FP, Schlüter PM (2014) Data from: Genic rather than genome-wide differences between sexually deceptive Ophrys orchids with different pollinators. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.05db4
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