Data from: Genomic and functional approaches reveal a case of adaptive introgression from Populus balsamifera (balsam poplar) in P. trichocarpa (black cottonwood)

Suarez-Gonzalez A, Hefer C, Christie C, Corea O, Lexer C, Cronk QCB, Douglas CJ

Date Published: January 7, 2016

DOI: http://dx.doi.org/10.5061/dryad.0817m

 

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Title Original SNP data ch6 12 15_replace
Downloaded 46 times
Description SNPs in three chromosomes (6, 12, 15) for 50 reference individuals (25 pure Populus balsamifera and 25 pure P. trichocarpa) and 68 admixed individuals
Download Original_data_set_ch6_12_15.zip (1.647 Gb)
Download README.txt (1.074 Kb)
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Title alpha estimates in introgressed regions
Downloaded 21 times
Description Data from Table 2. Alpha estimate for three introgressed P. balsamifera regions in P. trichocarpa, one in chromosome (Chr) 06 (region A) and two in chromosome 15 (B and C).
Download alpha.zip (4.989 Kb)
Download README.txt (351 bytes)
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Title Tajima and Nucleotide Diversity estimates
Downloaded 18 times
Description Data for Figure 2, Figure 4 Supporting Information (Tajimas' D) and Figure 7 Supporting Information (Nucleotide diversity).
Download Tajima_NucleotideDiversity.zip (652.0 Mb)
Download README.txt (372 bytes)
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Title RASPberry
Downloaded 30 times
Description Data for Figure 1, Figure 2 supportive information and Figure 3 supportive information.
Download RASPberry.zip (149.6 Mb)
Download README.txt (688 bytes)
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Title LD_Haploview
Downloaded 23 times
Description Data for Figure 3 and Figure 6 supportive information.
Download LD_Haploview.zip (380.8 Mb)
Download README.txt (550 bytes)
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Title NJ analysis
Downloaded 21 times
Description Data from Figure 1 Supporting information and Figure 5 Supporting information
Download NJ.zip (499.1 Kb)
Download README.txt (1.789 Kb)
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Title Gene_sequences
Downloaded 23 times
Description Data for Figure 4, Figure 8 supportive information and Figure 9 supportive information.
Download Gene_sequences.zip (100.9 Kb)
Download README.txt (1.067 Kb)
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Title 971Kb_filtered_dataset
Downloaded 24 times
Description This dataset was filtered based on minimum allele frequency (MAF >0.1) and missing data (GR 0.95), for 25 reference P. trichocarpa, 25 reference P. balsamifera and 68 admixed accessions. The initial dataset consisted of 971K SNPs from 3691 genes in all 19 chromosomes.
Download 971Kb_filtered_dataset.zip (12.43 Mb)
Download README.txt (486 bytes)
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When using this data, please cite the original publication:

Suarez-Gonzalez A, Hefer CA, Christie C, Corea O, Lexer C, Cronk QCB, Douglas CJ (2016) Genomic and functional approaches reveal a case of adaptive introgression from Populus balsamifera (balsam poplar) in P. trichocarpa (black cottonwood). Molecular Ecology 25(11): 2427–2442. http://dx.doi.org/10.1111/mec.13539

Additionally, please cite the Dryad data package:

Suarez-Gonzalez A, Hefer C, Christie C, Corea O, Lexer C, Cronk QCB, Douglas CJ (2016) Data from: Genomic and functional approaches reveal a case of adaptive introgression from Populus balsamifera (balsam poplar) in P. trichocarpa (black cottonwood). Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0817m
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