Data from: Genome-wide association analyses of fitness traits in captive-reared Chinook salmon: applications in evaluating conservation strategies

Waters C, Hard J, Brieuc M, Fast D, Warheit K, Knudsen C, Bosch W, Naish K

Date Published: January 12, 2018

DOI: https://doi.org/10.5061/dryad.08hc4

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Title Input files for Random Forest analyses
Downloaded 4 times
Description This file contains the original phenotypes and imputed genotypes for individuals prior to Random Forest analyses, along with the corrected phenotypes and genotypes that were analyzed by Random Forest for each of the six fitness traits.
Download Random_forest_traits_input_files.xlsx (297.2 Mb)
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Title Code to correct phenotypes and genotypes for confounding factors
Downloaded 1 time
Description This is the R script that was used to correct the phenotypes and imputed genotypes for possible confounding factors prior to conducting Random Forest analyses
Download Code_correct_for_covariates_before_RF.R (14.88 Kb)
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Title R script for Random Forest analyses of six fitness traits
Downloaded 1 time
Description R code for conducting Random Forest analyses on the six fitness traits
Download R script for Random Forest analyses of six ...ts.R (178.4 Kb)
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Title Phenotype comparisons for 2010
Downloaded 1 time
Description R code to quantify phenotypic differences between fish from the integrated and segregated hatchery lines in 2010
Download Phenotype_comparisons_2010.R (5.364 Kb)
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Waters C, Hard J, Brieuc M, Fast D, Warheit K, Knudsen C, Bosch W, Naish K (2018) Data from: Genome-wide association analyses of fitness traits in captive-reared Chinook salmon: applications in evaluating conservation strategies. Dryad Digital Repository. https://doi.org/10.5061/dryad.08hc4
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