Data from: Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring

Keck F, Rimet F, Franc A, Bouchez A

Date Published: September 21, 2015

DOI: http://dx.doi.org/10.5061/dryad.0db3f

 

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Title Alignement of the 18S sequences (all)
Downloaded 5 times
Description This is an alignment of all the 18S sequences in FASTA format.
Download S18_all.fas (7.003 Mb)
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Title Alignement of the 18S sequences (after pruning)
Downloaded 4 times
Description This is an alignment of the 18S sequences after tree pruning step, in FASTA format.
Download S18_pruned.fas (2.475 Mb)
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Title Taxonomic names of 18S sequences
Downloaded 8 times
Description This is a table that connects sequence IDs with taxonomic information (genus and species names).
Download S18_char.txt (15.27 Kb)
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Title Alignement of the rbcL sequences (after pruning)
Downloaded 6 times
Description This is an alignment of the rbcL sequences after tree pruning step, in FASTA format.
Download rbcl_pruned.fas (1.404 Mb)
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Title Alignement of the rbcL sequences (all)
Downloaded 3 times
Description This is an alignment of all the rbcL sequences in FASTA format.
Download rbcl_all.fas (3.383 Mb)
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Title Taxonomic names of rbcL sequences
Downloaded 7 times
Description This is a table that connects sequence IDs with taxonomic information (genus and species names).
Download rbcl_char.txt (16.11 Kb)
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Title Alignement of the 18S and rbcL sequences (after union)
Downloaded 3 times
Description This is an alignment of the 18S and rbcL sequences after union step, in FASTA format.
Download concat_union.fas (5.120 Mb)
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Title Alignement of the 18S and rbcL sequences (after intersection)
Downloaded 4 times
Description This is an alignment of the 18S and rbcL sequences after intersection step, in FASTA format.
Download concat_intersect.fas (1.851 Mb)
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Title Phylogenetic tree of diatoms (union data)
Downloaded 7 times
Description This is a phylogeny reconstructed by Maximum Likelihood with the union dataset.
Download ML_concat_union.tre (29.75 Kb)
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Title Phylogenetic tree of diatoms (intersection data)
Downloaded 14 times
Description This is a phylogeny reconstructed by Maximum Likelihood with the intersection dataset.
Download ML_concat_intersect.tre (15.36 Kb)
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Title Diatoms ecological optima
Downloaded 9 times
Description This a table of ecological optima for 128 species of diatoms and 19 environmental parameters
Download Data_Ecol_Optima.csv (48.22 Kb)
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When using this data, please cite the original publication:

Keck F, Rimet F, Franc A, Bouchez A (2015) Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring. Ecological Applications 26(3): 861-872. http://dx.doi.org/10.1890/14-1966

Additionally, please cite the Dryad data package:

Keck F, Rimet F, Franc A, Bouchez A (2015) Data from: Phylogenetic signal in diatom ecology: perspectives for aquatic ecosystems biomonitoring. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0db3f
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