Data from: A likelihood-based comparison of population histories in a parasitoid guild

 

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Title Lohse_2012_data.tar
Description The python scripts polarize.py and polarizeSumStat condense a file of multiple alignmnets (fasta format) into either a list of binary alignmnets (O=ancestral, 1=derived state) or a list summary statitsics (for details see Mathematica notebook Lohse_et_al 2012_Analysis). Both are simple text files which use Mathematica's list notation. The archive Lohse_2012_data.tar contains both the python scripts and the data files for each of the four parasitoid species. These are used as input for the likelihood analysis (see in Mathematica notebook Lohse_et_al 2012_Analysis).
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Title Lohse_et_al_2012_Analysis
Description Mathematica notebook implementing the likelihood calculation. The summary files provided in Lohse_2012_data.tar are used as input.
Download Lohse_et_al_2012_Analysis.nb (757.0 Kb)
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When using this data, please cite the original publication:

Lohse K, Barton N, Stone G, Melika G (2012) A likelihood-based comparison of population histories in a parasitoid guild. Molecular Ecology 21(18): 4605–4617. http://dx.doi.org/10.1111/j.1365-294X.2012.05700.x

Additionally, please cite the Dryad data package:

Lohse K, Barton N, Stone G, Melika G (2012) Data from: A likelihood-based comparison of population histories in a parasitoid guild. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0g0fs
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