Data from: Detecting epistasis from an ensemble of adapting populations

McCandlish DM, Otwinowski J, Plotkin JB

Date Published: July 13, 2015

DOI: http://dx.doi.org/10.5061/dryad.0hm4r

 

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Title Mathematica notebook used to make NK landscapes
Downloaded 15 times
Description This is a Mathematica notebook containing code to construct NK landscapes and the corresponding mean fitness trajectories.
Download McCandlishEtAl_MakeNK.nb (36.98 Kb)
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Title NK landscapes with N=10 and K=1
Downloaded 4 times
Description 1000 NK landscapes with N=10 and K=1. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
Download N_10_K_1.csv (18.40 Mb)
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Title NK landscapes with N=10 and K=2
Downloaded 4 times
Description 1000 NK landscapes with N=10 and K=2. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
Download N_10_K_2.csv (18.41 Mb)
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Title NK landscapes with N=10 and K=9
Downloaded 5 times
Description 1000 NK landscapes with N=10 and K=9. Comma separated values. First line gives genotypes as binary strings; each subsequent line corresponds to one fitness landscape and gives the fitness values for each genotype. Mean fitness trajectories were calculated starting from the genotype with all sites equal to zero.
Download N_10_K_9.csv (18.41 Mb)
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When using this data, please cite the original publication:

McCandlish DM, Otwinowski J, Plotkin JB (2015) Detecting epistasis from an ensemble of adapting populations. Evolution 69(9): 2359-2370. http://dx.doi.org/10.1111/evo.12735

Additionally, please cite the Dryad data package:

McCandlish DM, Otwinowski J, Plotkin JB (2015) Data from: Detecting epistasis from an ensemble of adapting populations. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0hm4r
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