Data from: Detection of genetic incompatibilities in non-model systems using simple genetic markers: hybrid breakdown in the haplodiploid spider mite Tetranychus evansi

Knegt B, Potter T, Pearson NA, Sato Y, Staudacher H, Schimmel BCJ, Kiers ET, Egas M

Date Published: September 6, 2016

DOI: http://dx.doi.org/10.5061/dryad.0j4m5

 

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Title Adjusted residual haplotype count R script
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Description This R script shows how the regression of adjusted residual haplotype count on allele indicator was performed
Download Knegt_etal_Adjusted_residuals.R (6.009 Kb)
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Title Dataset for regression of adjusted residual haplotype count against allele indicator - comparison viable I versus inviable I
Downloaded 4 times
Description This dataset was used for the regression of adjusted residual haplotype count against allele indicator, in the comparison of viable hybrids cytotype I versus inviable hybrids cytotype I. See the R script for details of the analysis.
Download Knegt_etal_Adjusted_residuals1.csv (3.858 Kb)
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Title Dataset for regression of adjusted residual haplotype count against allele indicator - comparison viable II versus inviable II
Downloaded 3 times
Description This dataset was used for the regression of adjusted residual haplotype count against allele indicator, in the comparison of viable hybrids cytotype II versus inviable hybrids cytotype II. See the R script for details of the analysis.
Download Knegt_etal_Adjusted_residuals2.csv (3.844 Kb)
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Title R script for the comparison of allele frequencies between hybrid groups
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Download Knegt_etal_Allele_frequencies.R (7.109 Kb)
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Title Allele frequencies - Fisher
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Description Dataset used for comparison of allele frequencies between hybrid groups: Fisher exact tests of independence. See R script for details.
Download Knegt_etal_Allele_frequencies1.csv (417 bytes)
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Title Allele frequencies - CMH
Downloaded 6 times
Description Dataset used for comparison of allele frequencies between hybrid groups: Cochran-Mantel-Haenszel tests. See R script for details.
Download Knegt_etal_Allele_frequencies2.csv (1.565 Kb)
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Title R script for analysis of F1 hatch rate
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Download Knegt_etal_F1_hatch_rate.R (4.301 Kb)
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Title F1 hatch rates
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Download Knegt_etal_F1_hatch_rate.csv (11.19 Kb)
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Title R script for analysis of F1 oviposition
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Download Knegt_etal_F1_oviposition.R (3.594 Kb)
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Title F1 oviposition
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Download Knegt_etal_F1_oviposition.csv (6.312 Kb)
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Title R script for analysis of F1 sex ratio
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Download Knegt_etal_F1_sex_ratio.R (5.123 Kb)
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Title F1 sex ratio
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Download Knegt_etal_F1_sex_ratio.csv (10.56 Kb)
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Title R script for analysis of F2 hatch rates
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Download Knegt_etal_F2_hatch_rate.R (4.383 Kb)
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Title F2 hatch rate
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Download Knegt_etal_F2_hatch_rate.csv (6.139 Kb)
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Title R script for analysis of parental oviposition
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Download Knegt_etal_Parental_oviposition.R (3.338 Kb)
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Title Parental oviposition
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Download Knegt_etal_Parental_oviposition.csv (9.946 Kb)
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Title R script for CMH tests among hybrid groups using their haplotype counts as input
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Download Knegt_etal_Haplotype_counts.R (1.908 Kb)
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Title Haplotype counts
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Download Knegt_etal_Haplotype_counts1.csv (9.973 Kb)
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When using this data, please cite the original publication:

Knegt B, Potter T, Pearson NA, Sato Y, Staudacher H, Schimmel BCJ, Kiers ET, Egas M (2016) Detection of genetic incompatibilities in non-model systems using simple genetic markers: hybrid breakdown in the haplodiploid spider mite Tetranychus evansi. Heredity 118(3): 311–321. http://dx.doi.org/10.1038/hdy.2016.103

Additionally, please cite the Dryad data package:

Knegt B, Potter T, Pearson NA, Sato Y, Staudacher H, Schimmel BCJ, Kiers ET, Egas M (2016) Data from: Detection of genetic incompatibilities in non-model systems using simple genetic markers: hybrid breakdown in the haplodiploid spider mite Tetranychus evansi. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0j4m5
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