Data from: Using spatial capture–recapture to elucidate population processes and space-use in herpetological studies

Muñoz DJ, Miller DAW, Sutherland C, Campbell Grant EH

Date Published: July 8, 2016

DOI: http://dx.doi.org/10.5061/dryad.0nm8t

 

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Title Sal_Data
Downloaded 17 times
Description This RData file contains the three seasons of mark-recapture data used for our analyses.
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Title EncHistBuilder_Closed
Downloaded 14 times
Description This R script contains functions to subset and format the salamander spreadsheet into a multi-catch SCR encounter history for a closed-population analysis.
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Title EncHistBuilder_RD
Downloaded 10 times
Description This R script contains functions to subset and format the salamander spreadsheet into a multi-catch SCR encounter history for a robust design analysis.
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Title Analysis_Closed
Downloaded 13 times
Description This R script contains all the steps to load the data, format it, and run the MCMC estimation through program JAGS for the closed-population spatial capture-recapture analysis.
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Title Analysis_RD.R
Downloaded 15 times
Description This R script contains all the steps to load the data, format it, and run the MCMC estimation through program JAGS for the robust design spatial capture-recapture analysis.
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Title ClosedPop JAGS Model
Downloaded 14 times
Description A model file for program JAGS. Contains the actual closed-population model whose parameters will be estimated in JAGS. Includes a covariate for sex of the individual.
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Title RD JAGS Model
Downloaded 22 times
Description A model file for program JAGS. Contains the actual robust design model whose parameters will be estimated in JAGS. Includes a covariate for sex of the individual.
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Title Season1_Closed_Results
Downloaded 16 times
Description The results from the autumn 2013 closed-population analysis.
Download Season1_Closed_Results.RData (30.43 Mb)
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Title Season2_Closed_Results
Downloaded 14 times
Description The results from the spring 2014 closed-population analysis.
Download Season2_Closed_Results.RData (30.06 Mb)
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Title Season3_Closed_Results
Downloaded 13 times
Description The results from the autumn 2014 closed-population analysis.
Download Season3_Closed_Results.RData (29.75 Mb)
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Title RD_Results
Downloaded 8 times
Description The results from the robust design analysis.
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Title Workflow
Downloaded 47 times
Description This file gives detailed instructions on how to use all of the scripts found in this repository and provides a step-by-step guide to run the analyses discussed in the manuscript.
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When using this data, please cite the original publication:

Muñoz DJ, Miller DAW, Sutherland C, Campbell Grant EH (2016) Using spatial capture–recapture to elucidate population processes and space-use in herpetological studies. Journal of Herpetology 50(4): 570-581. http://dx.doi.org/10.1670/15-166

Additionally, please cite the Dryad data package:

Muñoz DJ, Miller DAW, Sutherland C, Campbell Grant EH (2016) Data from: Using spatial capture–recapture to elucidate population processes and space-use in herpetological studies. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0nm8t
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