Data from: Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota

Gubry-Rangin C, Kratsch C, Williams TA, McHardy AC, Embley TM, Prosser JI, Macqueen DJ

Date Published: July 15, 2015

DOI: http://dx.doi.org/10.5061/dryad.0nv00

 

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Title 370_sequence amoA tree
Downloaded 19 times
Description Bayesian amoA phylogenetic tree derived from 454 sequencing
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Title Nucleotide alignment for the 370-sequence amoA tree
Downloaded 11 times
Description Nucleotide alignment (codon positions 1 and 2) for the 370-sequence amoA tree
Download AmoA_370_CP1+Cp2.fas (155.0 Kb)
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Title 508-sequence 16S rRNA tree
Downloaded 10 times
Description Bayesian 508-sequence phylogenetic 16S rRNA tree derived from merging non-redundant sequences available from the Silva database with non-redundant 454 dataset.
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Title 613_sequence amoA tree
Downloaded 10 times
Description Bayesian 613-sequence phylogenetic amoA tree derived from merging non-redundant sequences available from GenBank database with non-redundant 454 dataset.
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Title Nucleotide alignment for the 508-sequence 16S rRNA tree
Downloaded 7 times
Description Nucleotide alignment for the 508-sequence 16S rRNA tree, derived from merging non-redundant sequences available from the Silva database with non-redundant 454 dataset.
Download 16SrRNA_508.fas (308.7 Kb)
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Title Nucleotide alignment for the 613-sequence amoA tree
Downloaded 8 times
Description Nucleotide alignment for the 613-sequence amoA tree (codon positions 1 and 2), derived from merging non-redundant sequences available from GenBank database with non-redundant 454 dataset.
Download AmoA_613_CP1+2.fas (256.8 Kb)
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When using this data, please cite the original publication:

Gubry-Rangin C, Kratsch C, Williams TA, McHardy AC, Embley TM, Prosser JI, Macqueen DJ (2015) Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota. Proceedings of the National Academy of Sciences of the United States of America 112(30): 9370-9375. http://dx.doi.org/10.1073/pnas.1419329112

Additionally, please cite the Dryad data package:

Gubry-Rangin C, Kratsch C, Williams TA, McHardy AC, Embley TM, Prosser JI, Macqueen DJ (2015) Data from: Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota. Dryad Digital Repository. http://dx.doi.org/10.5061/dryad.0nv00
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